Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 2.5e-245 851.7 434 100.0
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 3.7e-244 847.8 434 99.5
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 7.0e-195 684.1 448 81.9
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 5.7e-181 637.9 447 77.0
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 9.2e-179 630.6 441 76.9
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 5.6e-176 621.3 449 75.9
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 8.9e-174 614.0 443 74.5
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 2.7e-162 575.9 453 68.7
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 3.5e-162 575.5 458 68.6
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 3.9e-161 572.0 380 80.8
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 3.3e-160 568.9 458 67.9
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 3.6e-159 565.5 453 69.1
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 5.2e-158 561.6 450 69.3
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 1.3e-156 557.0 438 70.5
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 1.9e-155 553.1 446 66.1
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 1.9e-152 543.1 439 67.4
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 9.5e-152 540.8 464 64.9
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 9.5e-152 540.8 454 65.0
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 2.8e-151 539.3 456 65.6
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 1.5e-149 533.5 456 65.1
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 1.9e-147 526.6 456 63.6
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 2.4e-147 526.2 454 63.7
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 6.0e-146 521.5 454 63.2
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 1.7e-145 520.0 458 65.7
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 8.7e-145 517.7 454 62.6
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 1.5e-144 516.9 440 66.6
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 1.5e-144 516.9 454 62.6
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 8.1e-143 511.1 395 70.6
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 1.8e-142 510.0 453 64.0
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 2.0e-141 506.5 418 66.3
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 5.8e-141 505.0 450 64.0
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 5.8e-141 505.0 450 63.1
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 2.9e-140 502.7 476 62.4
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 1.4e-139 500.4 471 61.6
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 5.4e-139 498.4 419 65.2
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 2.3e-137 493.0 447 61.7
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 1.1e-136 490.7 453 59.6
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.1e-134 484.2 467 61.0
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 5.3e-134 481.9 444 60.4
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 5.3e-134 481.9 465 60.9
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 9.0e-134 481.1 451 60.1
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 1.2e-130 470.7 381 69.3
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 1.5e-128 463.8 457 59.7
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 1.9e-128 463.4 475 56.6
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 2.5e-128 463.0 519 53.6
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 4.3e-128 462.2 398 62.8
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 7.4e-128 461.5 451 57.2
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 4.8e-127 458.8 457 57.3
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 1.4e-126 457.2 456 57.9
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 6.9e-126 454.9 457 56.9
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 6.9e-126 454.9 447 58.4
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 9.0e-126 454.5 457 57.3
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 1.7e-124 450.3 457 56.2
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 4.9e-124 448.7 456 57.7
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.2e-123 446.0 471 57.1
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 7.1e-123 444.9 456 54.6
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.6e-122 442.2 470 56.8
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 6.0e-122 441.8 454 57.0
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.8e-121 440.3 470 56.4
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.5e-120 437.2 461 57.0
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 2.5e-120 436.4 471 56.7
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 4.3e-120 435.6 458 56.3
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 1.4e-118 430.6 471 56.9
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 3.1e-118 429.5 472 56.4
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 2.0e-117 426.8 323 71.5
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 6.5e-116 421.8 430 54.2
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 8.4e-116 421.4 454 54.0
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 2.1e-114 416.8 373 60.9
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 1.8e-113 413.7 445 52.6
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 3.9e-113 412.5 338 65.7
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 8.7e-113 411.4 457 55.8
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 1.9e-112 410.2 315 69.8
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 2.8e-111 406.4 456 53.5
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 8.2e-111 404.8 462 53.5
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 1.1e-110 404.4 465 52.9
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 1.4e-110 404.1 456 53.1
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 1.8e-110 403.7 460 52.4
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 3.1e-110 402.9 457 55.6
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 4.5e-109 399.1 404 54.7
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 1.0e-108 397.9 445 53.5
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 2.9e-108 396.4 466 53.0
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 1.4e-107 394.0 462 53.5
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 1.6e-106 390.6 368 60.1
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.0e-105 386.3 251 79.7
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 8.2e-103 378.3 408 52.5
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.2e-101 374.4 516 46.1
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 2.9e-100 369.8 339 60.5
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 5.0e-100 369.0 358 60.3
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 6.1e-98 362.1 381 53.3
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 1.1e-94 351.3 344 58.7
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.7e-92 344.0 412 51.5
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 2.1e-82 310.5 425 47.5
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 8.8e-81 305.1 482 45.4
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 2.8e-79 300.1 271 62.0
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 5.5e-75 285.8 377 47.7
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 2.3e-73 280.4 423 45.4
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 3.0e-73 280.0 454 38.8
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.5e-72 277.7 479 40.5
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 4.1e-70 269.6 477 39.8
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.3e-68 263.8 178 73.6
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 8.9e-57 225.3 180 70.6
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 3.4e-56 223.4 295 45.4
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 5.8e-56 222.6 207 62.3
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 7.0e-54 215.7 376 41.5
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 4.6e-53 213.0 412 35.9
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.8e-33 147.9 137 51.8
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 7.1e-30 136.0 177 45.2
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 9.9e-24 115.5 162 43.2
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 3.4e-16 90.5 60 73.3
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 3.9e-12 77.0 46 78.3
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 3.1e-09 67.4 91 42.9


User provided reference genes

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