Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.4e-136 488.8 238 100.0
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.1e-106 390.2 238 83.6
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 2.8e-105 385.6 215 87.4
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 4.7e-100 368.2 212 85.8
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 6.1e-100 367.9 210 87.1
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.8e-99 366.3 210 86.2
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.8e-99 366.3 218 83.0
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.8e-99 366.3 210 86.7
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 3.9e-99 365.2 212 85.8
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.9e-99 365.2 212 85.8
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.9e-99 365.2 212 85.8
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 5.1e-99 364.8 211 85.8
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 5.1e-99 364.8 210 86.2
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 5.1e-99 364.8 210 86.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 8.8e-99 364.0 210 85.7
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.1e-98 363.6 212 85.4
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.5e-98 363.2 210 85.7
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.6e-98 362.5 210 84.8
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 2.6e-98 362.5 210 85.2
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 3.3e-98 362.1 210 85.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 3.3e-98 362.1 210 85.2
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 3.3e-98 362.1 210 84.3
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 4.4e-98 361.7 210 85.7
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 4.4e-98 361.7 210 85.7
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 4.4e-98 361.7 210 85.2
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 5.7e-98 361.3 210 84.3
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.7e-98 361.3 210 85.7
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 5.7e-98 361.3 210 84.8
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 5.7e-98 361.3 210 84.8
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 7.4e-98 360.9 210 84.3
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 9.7e-98 360.5 210 84.8
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 9.7e-98 360.5 210 84.8
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 9.7e-98 360.5 210 84.3
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.3e-97 360.1 221 80.5
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 2.2e-97 359.4 210 84.8
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.8e-97 359.0 210 84.8
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 3.7e-97 358.6 210 83.3
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 6.3e-97 357.8 210 84.3
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 6.3e-97 357.8 210 85.2
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 8.2e-97 357.5 210 83.8
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 8.2e-97 357.5 210 84.8
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.1e-96 357.1 210 83.3
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.1e-96 357.1 210 83.3
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.1e-96 357.1 210 83.3
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.1e-96 357.1 210 84.3
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.8e-96 356.3 210 83.8
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.8e-96 356.3 210 83.8
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.8e-96 356.3 209 84.7
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 2.4e-96 355.9 210 84.3
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 3.1e-96 355.5 210 83.8
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 4.1e-96 355.1 210 82.9
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.3e-96 354.8 216 81.9
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.3e-96 354.8 216 81.9
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 9.1e-96 354.0 210 82.4
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.0e-95 352.8 210 82.9
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.0e-95 352.8 210 83.8
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 2.6e-95 352.4 210 83.3
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 4.5e-95 351.7 210 84.3
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 5.9e-95 351.3 210 82.4
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 5.9e-95 351.3 210 81.9
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 5.9e-95 351.3 210 82.4
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 7.7e-95 350.9 210 82.4
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 7.7e-95 350.9 210 81.9
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.3e-94 350.1 210 83.3
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.3e-94 350.1 212 82.1
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.3e-94 350.1 210 81.4
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.7e-94 349.7 210 82.4
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.9e-94 349.0 210 82.9
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 3.8e-94 348.6 210 83.3
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 5.0e-94 348.2 210 81.0
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 6.5e-94 347.8 210 81.0
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 6.5e-94 347.8 210 81.0
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 6.5e-94 347.8 210 81.0
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 8.5e-94 347.4 211 82.5
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 2.5e-93 345.9 210 81.0
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 2.5e-93 345.9 210 81.0
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 9.4e-93 344.0 217 79.7
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.6e-92 343.2 210 80.0
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.6e-92 343.2 210 80.5
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 2.1e-92 342.8 210 80.0
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 3.6e-92 342.0 210 81.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 6.1e-92 341.3 210 79.5
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 6.1e-92 341.3 210 80.0
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.4e-91 340.1 205 82.9
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 3.9e-91 338.6 210 79.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 5.2e-91 338.2 210 79.0
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 6.7e-91 337.8 213 77.0
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.0e-90 336.3 211 77.7
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 4.4e-90 335.1 211 77.3
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 5.7e-90 334.7 211 77.3
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 7.4e-90 334.3 211 76.8
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 9.7e-90 334.0 210 77.6
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 2.2e-89 332.8 210 75.2
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 2.8e-89 332.4 210 76.7
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 3.7e-89 332.0 210 77.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 4.8e-89 331.6 211 77.3
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.6e-87 326.6 210 74.3
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.9e-87 324.7 210 72.9
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 2.5e-85 319.3 210 71.9
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.2e-85 317.8 210 71.4
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 9.4e-85 317.4 191 83.8
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.2e-84 317.0 210 71.4
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 3.6e-84 315.5 192 79.2
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 8.0e-84 314.3 192 80.2
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.5e-82 310.1 210 73.8
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 4.4e-82 308.5 210 69.0
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.3e-81 307.0 183 82.5
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.3e-81 307.0 212 67.5
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.2e-81 304.3 211 67.8
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.2e-79 300.4 182 81.9
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 5.5e-77 291.6 185 78.9
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 9.4e-77 290.8 182 79.1
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.4e-75 287.0 234 64.5
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 5.4e-72 275.0 192 72.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.1e-64 250.8 210 60.0
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.6e-60 236.9 162 74.1
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.8e-59 233.4 211 55.9
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.0e-56 221.5 205 54.6
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.2e-55 220.7 150 76.7
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.3e-54 216.5 110 97.3
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.5e-53 213.8 111 92.8
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.3e-53 212.6 230 46.5
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 4.3e-53 212.2 171 64.3
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 6.2e-52 208.4 133 75.9
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.3e-51 206.5 110 90.9
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.6e-50 203.0 180 58.9
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.7e-47 193.0 129 72.1
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.7e-47 193.0 133 71.4
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 9.2e-40 167.9 86 93.0
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.5e-39 166.0 79 96.2
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.6e-39 165.6 86 89.5
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.3e-38 164.1 79 94.9
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 6.6e-38 161.8 79 93.7
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 4.3e-37 159.1 83 92.8
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.6e-36 157.1 80 87.5
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 8.4e-33 144.8 71 93.0
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.0e-30 137.9 68 92.6
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.7e-30 137.1 68 89.7
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.3e-30 136.7 204 37.3
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 8.7e-30 134.8 87 81.6
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.5e-26 124.0 69 81.2
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 7.6e-26 121.7 69 79.7
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 7.6e-26 121.7 69 79.7
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 9.9e-26 121.3 57 98.2
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 3.4e-18 96.3 51 80.4
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 3.7e-12 76.3 38 86.8
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 8.1e-12 75.1 37 89.2
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 8.1e-12 75.1 37 89.2
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 8.1e-12 75.1 37 89.2
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 8.1e-12 75.1 37 89.2


User provided reference genes

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