Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CD5QST Arachis hypogaea HOM05D001137 ORTHO05D005066 2.7e-83 312.0 161 100.0
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 5.3e-23 111.7 57 100.0
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 5.3e-23 111.7 57 100.0
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 2.0e-22 109.8 57 96.5
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 2.6e-22 109.4 57 96.5
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 2.6e-22 109.4 57 96.5
FAN12G2022 Fragaria x ananassa HOM05D001137 ORTHO05D005066 2.6e-22 109.4 57 96.5
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 3.4e-22 109.0 57 96.5
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 3.4e-22 109.0 57 96.5
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 3.4e-22 109.0 57 96.5
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 3.4e-22 109.0 57 96.5
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 3.4e-22 109.0 57 96.5
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 3.4e-22 109.0 57 96.5
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 4.5e-22 108.6 57 94.7
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 5.9e-22 108.2 57 94.7
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 5.9e-22 108.2 57 94.7
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 5.9e-22 108.2 57 94.7
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 7.7e-22 107.8 57 94.7
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 7.7e-22 107.8 57 94.7
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 7.7e-22 107.8 57 94.7
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 7.7e-22 107.8 57 94.7
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 7.7e-22 107.8 57 94.7
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 1.0e-21 107.5 57 94.7
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.0e-21 107.5 57 93.0
Gohir.D09G241100 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.0e-21 107.5 57 93.0
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 1.0e-21 107.5 57 93.0
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 1.0e-21 107.5 57 93.0
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 1.3e-21 107.1 71 81.7
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.3e-21 107.1 57 94.7
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 1.7e-21 106.7 57 93.0
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 1.7e-21 106.7 57 93.0
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 2.2e-21 106.3 91 70.3
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 2.2e-21 106.3 91 70.3
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 91.2
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Lj3C813G4 Lonicera japonica HOM05D001137 ORTHO05D005066 2.2e-21 106.3 58 91.4
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 2.2e-21 106.3 91 70.3
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 2.2e-21 106.3 57 93.0
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 2.9e-21 105.9 57 93.0
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 2.9e-21 105.9 57 91.2
TWI09G0222 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 2.9e-21 105.9 72 80.6
COL.COLO4_13912 Corchorus olitorius HOM05D001137 ORTHO05D005066 5.0e-21 105.1 57 91.2
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 5.0e-21 105.1 57 91.2
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 5.0e-21 105.1 57 91.2
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 5.0e-21 105.1 99 62.6
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 6.5e-21 104.8 57 91.2
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 6.5e-21 104.8 57 91.2
Dinv38312 Davidia involucrata HOM05D001137 ORTHO05D005066 6.5e-21 104.8 69 82.6
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 6.5e-21 104.8 57 91.2
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 8.5e-21 104.4 57 89.5
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 8.5e-21 104.4 57 91.2
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 8.5e-21 104.4 57 93.0
Hund24915 Selenicereus undatus HOM05D001137 ORTHO05D005066 8.5e-21 104.4 57 91.2
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 8.5e-21 104.4 78 73.1
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 8.5e-21 104.4 78 73.1
Actinidia40240 Actinidia chinensis HOM05D001137 ORTHO05D005066 1.1e-20 104.0 57 91.2
Aqoxy2G03075 Aquilegia oxysepala HOM05D001137 ORTHO05D005066 1.1e-20 104.0 57 89.5
Nitab4.5_0000644g0060 Nicotiana tabacum HOM05D001137 ORTHO05D005066 1.1e-20 104.0 69 81.2
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 1.1e-20 104.0 69 81.2
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 1.1e-20 104.0 57 89.5
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 1.1e-20 104.0 57 87.7
PGSC0003DMG401022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 1.1e-20 104.0 71 77.5
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 1.1e-20 104.0 57 89.5
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 1.4e-20 103.6 57 89.5
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 1.4e-20 103.6 57 89.5
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 1.4e-20 103.6 69 81.2
ATR0706G140 Amborella trichopoda HOM05D001137 ORTHO05D005066 1.9e-20 103.2 57 91.2
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 1.9e-20 103.2 57 91.2
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 1.9e-20 103.2 69 81.2
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 1.9e-20 103.2 57 89.5
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 1.9e-20 103.2 57 89.5
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 1.9e-20 103.2 80 67.5
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 1.9e-20 103.2 57 91.2
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 1.9e-20 103.2 56 91.1
CDE11G0818 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 89.5
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 87.7
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 87.7
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 87.7
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 89.5
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 89.5
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 87.7
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 87.7
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 2.5e-20 102.8 71 78.9
HPP92_015154 Vanilla planifolia HOM05D001137 ORTHO05D005066 2.5e-20 102.8 57 89.5
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 3.2e-20 102.4 57 89.5
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 3.2e-20 102.4 57 89.5
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 3.2e-20 102.4 57 89.5
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 3.2e-20 102.4 57 89.5
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 3.2e-20 102.4 57 89.5
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 3.2e-20 102.4 57 89.5
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 3.2e-20 102.4 80 67.5
CSS0024935 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 4.2e-20 102.1 75 76.0
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 4.2e-20 102.1 80 70.0
Ca_21540_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 4.2e-20 102.1 80 70.0
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 4.2e-20 102.1 67 79.1
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 7.2e-20 101.3 57 87.7
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 7.2e-20 101.3 57 87.7
unitig_748.g8584 Utricularia gibba HOM05D001137 ORTHO05D005066 9.4e-20 100.9 57 86.0
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 1.6e-19 100.1 57 86.0
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 2.1e-19 99.8 57 89.5
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 2.1e-19 99.8 67 77.6
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 4.7e-19 98.6 57 84.2
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 6.1e-19 98.2 57 84.2
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 6.1e-19 98.2 57 87.7
SEGI_27339 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 6.1e-19 98.2 57 80.7
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 1.0e-18 97.4 73 69.9
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 1.8e-18 96.7 57 82.5
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 1.8e-18 96.7 57 82.5
Os12g0538800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 9.7e-17 90.9 57 77.2
Zm00001eb410440 Zea mays HOM05D001137 ORTHO05D005066 5.3e-15 85.1 69 66.7
BolC2t06908H Brassica oleracea HOM05D000116 ORTHO05D000133 6.9e-15 84.7 63 71.4
Pp3c11_2880 Physcomitrium patens HOM05D001137 ORTHO05D005066 1.7e-13 80.1 57 68.4
AagrBONN_evm.TU.Sc2ySwM_344.1606 Anthoceros agrestis HOM05D001137 ORTHO05D005066 5.0e-13 78.6 51 68.6
Pp3c1_4300 Physcomitrium patens HOM05D001137 ORTHO05D005066 2.5e-12 76.3 54 66.7
SMO141G0291 Selaginella moellendorffii HOM05D001137 ORTHO05D005066 5.5e-12 75.1 43 79.1
Pp3c23_20210 Physcomitrium patens HOM05D001137 ORTHO05D005066 2.1e-11 73.2 57 59.6
Pp3c7_20910 Physcomitrium patens HOM05D001137 ORTHO05D005066 2.7e-11 72.8 52 65.4
C02p10070 Brassica napus HOM05D001137 ORTHO05D005066 1.4e-10 70.5 47 76.6
Glyma.15G096200 Glycine max HOM05D001137 ORTHO05D005066 2.3e-10 69.7 37 91.9
Mapoly0008s0142 Marchantia polymorpha HOM05D001137 ORTHO05D005066 3.9e-10 68.9 50 64.0
Cpa.g.sc1214.1 Carica papaya HOM05D001137 ORTHO05D005066 8.8e-10 67.8 39 84.6
Aa31LG11G11030 Aethionema arabicum HOM05D001137 ORTHO05D005066 1.1e-09 67.4 37 89.2
PGSC0003DMG400019543 Solanum tuberosum HOM05D001137 ORTHO05D005066 1.5e-09 67.0 49 65.3
ClCG00G003670 Citrullus lanatus HOM05D001137 ORTHO05D005066 2.0e-09 66.6 37 86.5
BcaC03g13611 Brassica carinata HOM05D001137 ORTHO05D015478 1.4e-07 60.5 68 52.9
Zm00001eb165710 Zea mays HOM05D001137 ORTHO05D005066 1.8e-07 60.1 37 78.4
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 2.4e-07 59.7 50 60.0
arahy.Tifrunner.gnm1.ann1.2P0S20 Arachis hypogaea HOM05D003169 ORTHO05D003700 3.1e-07 59.3 46 63.0


User provided reference genes

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