Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1729.5 852 100.0
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1645.6 853 95.9
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1450.6 750 96.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1367.8 718 94.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 0.0e+00 1103.6 873 65.3
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 0.0e+00 1090.5 871 64.4
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 0.0e+00 1087.8 870 63.8
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 0.0e+00 1085.5 874 63.2
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 0.0e+00 1080.9 870 64.3
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 0.0e+00 1075.8 862 65.0
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.2e-311 1072.8 858 63.9
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 8.3e-309 1063.5 858 63.6
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.7e-306 1055.8 862 62.2
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.7e-304 1047.7 550 94.5
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 1.0e-274 950.3 878 58.4
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 3.9e-274 948.3 722 69.9
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 7.4e-265 917.5 762 62.7
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 2.5e-257 892.5 1088 48.3
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 1.7e-240 836.6 916 48.7
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 7.4e-233 811.2 927 48.1
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 6.5e-229 798.1 883 48.4
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.3e-224 783.9 884 47.7
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 3.7e-224 782.3 917 47.3
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 5.9e-222 775.0 877 47.9
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 4.7e-219 765.4 932 46.1
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 2.3e-218 763.1 897 46.6
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.3e-216 757.3 941 45.6
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.8e-216 756.1 941 45.7
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 6.5e-213 745.0 913 44.7
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 9.5e-212 741.1 918 45.0
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 1.6e-211 740.3 916 44.9
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.7e-211 739.6 918 44.9
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 3.0e-210 736.1 917 45.1
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 3.4e-209 732.6 876 45.9
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 9.8e-209 731.1 918 44.7
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 4.1e-207 725.7 927 44.6
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 2.0e-206 723.4 935 44.1
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.3e-205 720.7 809 49.1
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 1.7e-205 720.3 886 44.4
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.8e-202 710.3 933 43.1
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 3.0e-202 709.5 852 45.7
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.2e-198 697.6 860 46.5
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 5.9e-198 695.3 891 42.4
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 1.2e-195 687.6 1129 38.2
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 2.1e-195 686.8 888 42.7
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 5.2e-194 682.2 920 41.6
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 3.2e-191 672.9 916 40.9
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 2.7e-190 669.8 919 41.3
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 2.7e-190 669.8 904 41.6
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 3.5e-190 669.5 919 41.7
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 7.8e-190 668.3 919 41.2
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 7.8e-190 668.3 919 41.6
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 3.9e-189 666.0 917 40.3
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 5.0e-189 665.6 895 41.3
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 3.3e-188 662.9 875 43.7
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 9.5e-188 661.4 1132 36.8
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 2.1e-187 660.2 1131 37.2
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 2.3e-186 656.8 924 40.7
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 5.2e-186 655.6 569 63.4
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 4.4e-185 652.5 917 40.3
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 4.4e-185 652.5 926 39.7
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 9.8e-185 651.4 906 40.9
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.7e-184 650.6 1126 36.1
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.1e-183 647.9 913 40.9
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 5.4e-183 645.6 904 40.2
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 5.4e-183 645.6 945 39.5
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 1.6e-182 644.0 907 42.1
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.7e-181 640.6 1117 35.9
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 5.6e-180 635.6 903 41.0
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 9.5e-180 634.8 891 43.3
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 8.4e-176 621.7 897 40.7
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 4.1e-175 619.4 1121 35.0
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 6.6e-173 612.1 807 44.2
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 2.5e-164 583.6 857 41.3
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.3e-164 583.2 891 40.1
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 4.8e-163 579.3 848 40.4
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 2.6e-161 573.5 856 41.9
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.3e-160 571.2 669 47.7
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.7e-160 570.9 861 40.2
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.4e-159 567.8 891 38.9
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.9e-156 557.4 785 42.7
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 4.3e-156 556.2 1106 33.3
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.4e-154 551.2 529 56.9
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.9e-152 543.5 797 39.4
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.4e-151 541.2 922 36.0
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 2.7e-150 537.0 649 45.9
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.9e-144 516.9 931 35.8
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 4.9e-144 516.2 1058 33.7
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.4e-143 514.6 1068 31.8
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 3.0e-141 506.9 985 33.2
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 6.9e-138 495.7 845 38.0
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.6e-134 484.6 715 40.4
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.5e-132 478.0 1047 31.4
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.3e-132 476.9 771 37.4
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.2e-120 437.6 1002 31.7
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 3.6e-118 430.3 514 47.5
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 6.3e-115 419.5 713 37.6
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 1.1e-111 408.7 944 30.4
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 8.0e-110 402.5 517 42.7
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 4.8e-107 393.3 630 38.9
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 6.5e-104 382.9 838 32.3
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.6e-102 378.3 962 30.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 4.0e-101 373.6 553 39.1
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 6.3e-99 366.3 472 42.6
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 3.0e-93 347.4 612 34.6
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.3e-88 332.0 955 29.2
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 5.2e-85 320.1 388 46.1
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 2.5e-79 301.2 742 30.5
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 2.8e-78 297.7 463 38.2
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 2.3e-77 294.7 738 29.8
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 6.8e-69 266.5 396 38.9
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.7e-67 261.9 304 44.7
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 4.1e-66 257.3 366 37.4
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.1e-63 249.2 279 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 7.1e-58 229.9 939 24.3
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.4e-53 215.7 365 34.8
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 7.1e-50 203.4 653 27.3
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.9e-47 195.3 143 59.4
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 5.6e-47 193.7 177 52.5
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 8.1e-46 189.9 142 59.9
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 8.1e-46 189.9 270 41.1
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.5e-44 185.7 153 56.2
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.9e-42 178.7 200 46.5
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.7e-41 174.9 153 50.3
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 6.7e-40 170.2 160 50.6
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.0e-36 158.7 174 47.7
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 5.5e-26 124.0 85 71.8
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 2.1e-25 122.1 135 41.5
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 2.3e-24 118.6 104 53.8
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 2.3e-24 118.6 405 25.9
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 2.5e-23 115.2 183 39.3
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 2.8e-22 111.7 75 61.3
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 5.3e-21 107.5 123 46.3
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 9.1e-13 80.1 139 36.0
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.3e-08 65.5 162 30.2


User provided reference genes

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