Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 9.6e-217 756.5 376 100.0
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.4e-215 752.7 376 99.5
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 7.2e-156 554.3 337 80.7
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 6.1e-155 551.2 334 77.8
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 4.4e-153 545.0 337 79.5
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.8e-151 539.7 334 76.0
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 2.3e-149 532.7 335 76.7
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.1e-148 530.4 340 75.6
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 4.7e-147 525.0 338 76.3
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.4e-145 518.8 342 71.9
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 4.4e-145 518.5 317 75.7
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 8.3e-144 514.2 338 73.7
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.8e-143 513.1 340 73.2
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.4e-143 512.7 343 71.1
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 3.2e-143 512.3 345 72.8
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.0e-142 509.6 345 71.9
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 6.6e-141 504.6 330 74.2
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 6.6e-141 504.6 341 70.1
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.3e-140 501.9 336 72.3
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 7.5e-137 491.1 437 58.4
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 3.2e-135 485.7 340 68.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 2.0e-134 483.0 340 67.6
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 3.5e-134 482.3 328 70.1
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.7e-133 479.9 334 68.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.1e-132 477.2 334 68.0
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.1e-132 477.2 334 68.0
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.5e-132 476.9 318 69.5
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.5e-132 476.1 341 67.4
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.5e-132 476.1 341 67.4
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.3e-132 475.3 345 66.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 7.3e-132 474.6 374 64.7
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.2e-131 473.8 337 68.0
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.1e-131 473.0 349 67.6
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 2.8e-131 472.6 336 68.2
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 6.2e-131 471.5 336 68.5
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.1e-130 470.7 339 67.8
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-130 470.7 319 70.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.4e-130 470.3 336 66.7
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.2e-129 467.2 325 69.5
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.5e-129 466.8 319 69.0
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.4e-129 465.3 319 68.7
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.2e-128 463.0 319 68.7
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.7e-128 462.2 337 67.4
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 8.3e-128 461.1 337 67.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.1e-127 460.7 332 67.5
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.1e-127 460.7 336 65.2
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.4e-127 460.3 319 70.8
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 5.4e-127 458.4 342 65.5
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 5.4e-127 458.4 345 63.8
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 5.4e-127 458.4 313 70.0
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 7.1e-127 458.0 328 68.3
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 9.2e-127 457.6 384 60.4
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 3.5e-126 455.7 337 66.8
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 4.6e-126 455.3 313 70.0
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 6.0e-126 454.9 348 66.1
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 6.0e-126 454.9 348 66.4
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 7.8e-126 454.5 349 64.8
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 3.0e-125 452.6 230 95.2
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 5.1e-125 451.8 336 65.2
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-124 450.7 341 66.0
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-123 447.2 308 68.8
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 4.7e-123 445.3 319 67.7
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.2e-123 444.9 373 58.4
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.1e-122 444.1 319 67.7
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.1e-122 444.1 363 60.1
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.1e-122 444.1 363 60.1
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.4e-122 443.7 318 67.6
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.6e-121 439.5 340 64.7
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 7.6e-121 438.0 346 63.3
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.7e-120 436.8 312 66.3
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 2.2e-120 436.4 334 64.4
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 3.7e-120 435.6 337 63.8
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 8.4e-120 434.5 308 67.9
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.4e-119 433.7 340 63.8
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 3.5e-118 429.1 324 64.8
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 4.6e-118 428.7 327 64.5
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.0e-118 428.3 327 65.4
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.0e-117 427.6 318 66.0
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.7e-117 426.8 337 63.5
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.0e-117 426.0 316 65.5
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.5e-116 422.9 338 61.8
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 2.5e-116 422.9 341 61.6
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.0e-113 413.3 335 61.8
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.0e-113 413.3 279 71.0
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 9.9e-113 411.0 352 60.2
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 6.4e-112 408.3 349 59.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.4e-111 407.1 309 64.1
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 9.3e-111 404.4 272 69.5
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.3e-109 400.6 264 70.1
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.7e-109 400.2 350 58.9
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 3.9e-109 399.1 269 70.3
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.9e-109 399.1 268 71.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 6.6e-109 398.3 298 66.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.1e-108 397.5 311 60.1
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.3e-108 396.0 377 56.5
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.4e-106 389.8 271 70.5
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 8.4e-104 381.3 243 72.8
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.7e-101 373.6 338 57.7
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.5e-100 370.5 248 71.4
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.3e-99 367.5 351 55.6
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 5.3e-98 362.1 342 55.8
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 9.0e-98 361.3 407 49.4
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.0e-97 360.1 323 56.7
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 4.5e-97 359.0 320 58.4
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 7.6e-97 358.2 245 69.0
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-95 354.4 326 55.2
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 2.4e-95 353.2 330 57.0
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 7.1e-95 351.7 203 74.9
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 6.0e-94 348.6 328 56.7
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.3e-93 346.7 317 55.5
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 8.7e-93 344.7 359 52.1
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.9e-92 343.6 296 58.8
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 4.0e-90 335.9 324 56.2
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.9e-90 335.1 339 55.5
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-89 334.0 334 54.8
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.9e-88 328.9 342 54.1
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 4.9e-88 328.9 330 55.8
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.9e-87 327.0 311 55.9
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-82 311.2 280 57.9
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 7.6e-81 305.1 345 51.3
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.0e-80 304.7 256 59.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.3e-80 304.3 303 50.8
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.5e-79 298.9 392 43.1
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.3e-67 261.2 302 46.0
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 8.5e-64 248.4 343 40.8
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.2e-62 244.6 305 44.3
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.6e-62 244.2 340 40.6
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.6e-60 236.9 302 42.1
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 9.1e-58 228.4 241 52.3
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 5.9e-57 225.7 131 72.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.9e-56 223.4 156 67.3
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 9.7e-52 208.4 153 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 2.4e-50 203.8 254 41.3
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 2.0e-49 200.7 279 41.6
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 7.7e-49 198.7 160 57.5
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 2.2e-48 197.2 113 77.0
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.9e-48 196.8 201 46.3
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 3.6e-46 189.9 340 38.5
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.2e-44 184.9 251 43.4
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 3.5e-41 173.3 237 42.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.3e-40 171.4 302 35.1
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 6.1e-38 162.5 101 73.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 9.5e-31 138.7 254 33.9
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.4e-29 134.8 246 35.0
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.8e-29 132.5 255 32.9
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-28 131.7 232 36.2
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.5e-28 131.3 393 27.5
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 5.4e-26 122.9 344 30.8
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.5e-23 112.1 156 37.8
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 4.7e-22 109.8 77 68.8
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 4.7e-22 109.8 77 68.8
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.0e-21 108.6 77 67.5
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.4e-21 108.2 153 39.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 5.2e-21 106.3 113 39.8
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 6.8e-21 105.9 84 61.9
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 8.9e-21 105.5 112 37.5
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 4.4e-20 103.2 211 33.2
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 2.2e-19 100.9 122 50.8
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 9.2e-18 95.5 291 27.5
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 7.8e-17 92.4 60 71.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.3e-16 91.7 249 28.9
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 4.7e-14 83.2 80 55.0
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.6e-12 77.4 94 47.9
PGR042G2939 Punica granatum HOM05D002901 ORTHO05D003183 1.5e-07 61.6 50 60.0
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 2.5e-07 60.8 68 48.5


User provided reference genes

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