Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-60 235.7 111 100.0
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-23 112.8 86 67.4
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 3.4e-21 105.1 83 63.9
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 2.9e-20 102.1 86 60.5
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.8e-20 101.7 80 63.8
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.8e-20 101.7 86 58.1
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.5e-20 100.9 80 62.5
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-19 99.8 86 59.3
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.4e-19 99.8 86 59.3
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 3.2e-19 98.6 86 59.3
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.2e-19 98.6 86 59.3
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 7.1e-19 97.4 86 59.3
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 9.3e-19 97.1 66 69.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.2e-18 96.7 86 58.1
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-18 96.3 73 57.5
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.6e-18 96.3 84 57.1
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 4.6e-18 94.7 86 54.7
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.3e-17 93.2 86 53.5
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 1.8e-17 92.8 86 53.5
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.8e-17 92.8 86 54.7
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.3e-17 92.4 86 54.7
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.3e-17 92.4 81 56.8
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.0e-17 92.0 86 53.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 3.9e-17 91.7 86 52.3
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.9e-17 91.7 86 51.2
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.9e-17 91.7 86 52.3
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.9e-17 91.7 86 52.3
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.9e-17 91.7 86 52.3
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 3.9e-17 91.7 86 52.3
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 5.1e-17 91.3 86 54.7
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 6.7e-17 90.9 86 53.5
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 8.7e-17 90.5 86 51.2
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 1.1e-16 90.1 86 55.8
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.5e-16 89.7 86 53.5
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.5e-16 89.7 86 53.5
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-16 89.0 86 53.5
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.5e-16 89.0 86 53.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.3e-16 88.6 86 54.7
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 3.3e-16 88.6 86 54.7
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.3e-16 88.2 86 55.8
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.3e-16 88.2 86 52.3
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.3e-16 88.2 86 52.3
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 4.3e-16 88.2 86 54.7
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.3e-16 88.2 81 54.3
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.7e-16 87.8 86 55.8
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.7e-16 87.8 86 55.8
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 9.7e-16 87.0 86 51.2
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.3e-15 86.7 86 48.8
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-15 86.3 86 52.3
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.6e-15 86.3 81 54.3
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.6e-15 86.3 86 48.8
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 2.8e-15 85.5 88 48.9
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.7e-15 85.1 84 51.2
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.7e-15 85.1 86 51.2
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 6.3e-15 84.3 86 51.2
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 6.3e-15 84.3 86 47.7
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.3e-15 84.3 86 51.2
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 8.2e-15 84.0 70 57.1
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.4e-14 83.2 84 47.6
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.4e-14 83.2 86 48.8
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-14 83.2 86 46.5
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.8e-14 82.8 86 45.3
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.8e-14 82.8 86 46.5
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.8e-14 82.8 79 50.6
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.8e-14 82.8 86 50.0
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.4e-14 82.4 84 47.6
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.1e-14 82.0 86 48.8
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.1e-14 82.0 86 48.8
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 3.1e-14 82.0 84 51.2
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 3.1e-14 82.0 81 49.4
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 4.1e-14 81.6 86 51.2
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.1e-14 81.6 70 54.3
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 4.1e-14 81.6 83 50.6
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.1e-14 81.6 84 47.6
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 5.3e-14 81.3 81 49.4
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 5.3e-14 81.3 86 48.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.9e-14 80.9 86 47.7
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 6.9e-14 80.9 86 50.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 6.9e-14 80.9 86 47.7
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 9.0e-14 80.5 81 48.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 9.0e-14 80.5 78 50.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.5e-13 79.7 86 45.3
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.0e-13 79.3 86 46.5
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 2.0e-13 79.3 86 44.2
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.0e-13 79.3 70 52.9
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.0e-13 79.3 84 46.4
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.0e-13 79.3 80 47.5
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.6e-13 79.0 81 48.1
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.6e-13 79.0 76 50.0
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.6e-13 79.0 76 50.0
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.4e-13 78.6 86 46.5
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 3.4e-13 78.6 84 46.4
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.5e-13 78.2 65 60.0
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 4.5e-13 78.2 86 43.0
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 4.5e-13 78.2 86 44.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 4.5e-13 78.2 70 52.9
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 5.9e-13 77.8 80 45.0
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 7.6e-13 77.4 70 52.9
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.0e-12 77.0 70 52.9
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.0e-12 77.0 84 45.2
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.0e-12 77.0 84 45.2
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.0e-12 77.0 83 45.8
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.0e-12 77.0 82 48.8
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.3e-12 76.6 70 51.4
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.3e-12 76.6 86 44.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.3e-12 76.6 86 44.2
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.3e-12 76.6 78 50.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.3e-12 76.6 78 50.0
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.7e-12 76.3 86 46.5
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.2e-12 75.9 84 45.2
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.2e-12 75.9 86 43.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.2e-12 75.9 70 51.4
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 2.9e-12 75.5 86 44.2
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 2.9e-12 75.5 86 44.2
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 2.9e-12 75.5 86 44.2
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 2.9e-12 75.5 86 44.2
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.8e-12 75.1 86 43.0
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 3.8e-12 75.1 86 44.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 6.5e-12 74.3 70 52.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.5e-12 73.9 104 41.3
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.4e-11 73.2 76 46.1
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.5e-11 72.4 76 47.4
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.5e-11 72.4 85 45.9
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.5e-11 72.4 70 47.1
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.5e-11 72.4 70 48.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.2e-11 72.0 38 81.6
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 3.2e-11 72.0 86 41.9
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 3.2e-11 72.0 86 41.9
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 5.5e-11 71.2 86 40.7
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 5.5e-11 71.2 86 40.7
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 7.2e-11 70.9 70 45.7
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.7e-10 68.9 84 39.3
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 4.6e-10 68.2 70 44.3
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 6.1e-10 67.8 80 42.5
arahy.Tifrunner.gnm1.ann1.T252JQ Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-09 66.6 41 78.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.5e-08 62.4 84 34.5
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 4.3e-08 61.6 58 53.4
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 7.4e-08 60.8 38 65.8
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.8e-07 58.9 38 65.8
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.7e-07 58.5 38 63.2
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 3.7e-07 58.5 38 63.2
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 4.8e-07 58.2 38 65.8
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 8.2e-07 57.4 70 35.7
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.1e-06 57.0 46 54.3
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 3.1e-06 55.5 70 37.1
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 4.1e-06 55.1 38 60.5
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 4.1e-06 55.1 38 60.5
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 6.9e-06 54.3 49 53.1
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.1e-06 53.9 50 52.0


User provided reference genes

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