Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-59 233.0 120 100.0
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.6e-32 142.9 80 95.0
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 8.2e-29 130.6 91 79.1
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.1e-28 130.2 91 79.1
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.8e-28 129.4 91 78.0
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.4e-15 86.7 149 42.3
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 1.8e-15 86.3 149 42.3
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 3.5e-11 72.0 55 67.3
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 2.3e-10 69.3 106 46.2
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 2.9e-10 68.9 55 63.6
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 5.0e-10 68.2 97 46.4
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 8.6e-10 67.4 97 46.4
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 8.6e-10 67.4 58 60.3
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 2.5e-09 65.9 55 60.0
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 2.5e-09 65.9 55 61.8
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 3.3e-09 65.5 56 58.9
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.2e-09 65.1 55 60.0
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.2e-09 65.1 55 61.8
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 4.2e-09 65.1 55 61.8
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 4.2e-09 65.1 55 61.8
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 4.2e-09 65.1 150 35.3
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 5.5e-09 64.7 55 61.8
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.5e-09 64.7 106 43.4
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.5e-09 64.7 106 43.4
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 5.5e-09 64.7 55 58.2
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 7.2e-09 64.3 55 58.2
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 7.2e-09 64.3 55 60.0
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 9.5e-09 63.9 55 60.0
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.2e-08 63.5 106 42.5
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.2e-08 63.5 106 42.5
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.2e-08 63.5 58 58.6
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 1.2e-08 63.5 55 58.2
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.6e-08 63.2 55 56.4
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.6e-08 63.2 55 58.2
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.6e-08 63.2 143 35.7
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 1.6e-08 63.2 86 51.2
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.6e-08 63.2 143 35.7
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 1.6e-08 63.2 80 47.5
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.6e-08 63.2 55 56.4
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.1e-08 62.8 55 56.4
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 2.1e-08 62.8 55 58.2
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.8e-08 62.4 55 54.5
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 2.8e-08 62.4 55 60.0
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.6e-08 62.0 55 56.4
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 3.6e-08 62.0 55 54.5
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 3.6e-08 62.0 55 61.8
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 3.6e-08 62.0 144 34.7
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 3.6e-08 62.0 55 56.4
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 4.7e-08 61.6 90 44.4
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 4.7e-08 61.6 85 44.7
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 4.7e-08 61.6 55 56.4
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.1e-08 61.2 55 56.4
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 6.1e-08 61.2 84 45.2
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 6.1e-08 61.2 100 41.0
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 6.1e-08 61.2 101 43.6
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 8.0e-08 60.8 55 56.4
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 8.0e-08 60.8 55 54.5
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 8.0e-08 60.8 55 54.5
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.4e-07 60.1 55 58.2
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 1.8e-07 59.7 55 56.4
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 1.8e-07 59.7 55 54.5
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 2.3e-07 59.3 100 42.0
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 2.3e-07 59.3 55 56.4
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 2.3e-07 59.3 55 56.4
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 2.3e-07 59.3 80 45.0
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 3.0e-07 58.9 70 47.1
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 3.0e-07 58.9 63 50.8
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 4.0e-07 58.5 55 56.4
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 4.0e-07 58.5 81 46.9
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 4.0e-07 58.5 55 50.9
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 4.0e-07 58.5 56 51.8
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 6.8e-07 57.8 55 52.7
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 6.8e-07 57.8 55 54.5
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.8e-07 57.8 55 52.7
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 6.8e-07 57.8 55 54.5
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 8.9e-07 57.4 55 52.7
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 8.9e-07 57.4 55 50.9
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 8.9e-07 57.4 55 49.1
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.5e-06 56.6 147 32.0
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 1.5e-06 56.6 55 50.9
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.5e-06 56.6 56 48.2
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.5e-06 56.6 56 48.2
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.0e-06 56.2 56 50.0
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 2.0e-06 56.2 98 40.8
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 2.0e-06 56.2 55 54.5
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 2.0e-06 56.2 55 49.1
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.0e-06 56.2 55 54.5
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.0e-06 56.2 101 39.6
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 2.6e-06 55.8 69 44.9
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.6e-06 55.8 55 47.3
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.6e-06 55.8 55 47.3
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 2.6e-06 55.8 55 47.3
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 3.4e-06 55.5 100 37.0
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 4.4e-06 55.1 55 47.3
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 4.4e-06 55.1 105 40.0
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 5.7e-06 54.7 54 51.9
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 7.5e-06 54.3 76 46.1
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 7.5e-06 54.3 76 46.1
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.5e-06 54.3 56 48.2
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 7.5e-06 54.3 55 50.9
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 9.8e-06 53.9 55 47.3


User provided reference genes

Program Settings