Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 5.5e-141 504.2 242 100.0
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 6.6e-110 401.0 357 62.5
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 3.1e-107 392.1 357 61.3
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 9.9e-74 280.8 278 54.3
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 3.5e-71 272.3 280 53.2
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 4.6e-71 271.9 280 52.5
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 5.1e-70 268.5 280 50.7
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 8.7e-70 267.7 280 50.4
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 2.5e-69 266.2 274 51.8
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 3.3e-69 265.8 280 49.6
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 3.3e-69 265.8 280 51.1
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 2.1e-68 263.1 279 50.2
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 2.1e-68 263.1 283 49.5
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 2.1e-68 263.1 280 50.4
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 2.1e-68 263.1 243 58.0
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 2.1e-68 263.1 280 50.7
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 2.1e-68 263.1 282 50.7
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 3.7e-68 262.3 280 50.7
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 4.8e-68 261.9 277 50.5
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 4.8e-68 261.9 280 50.0
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 6.2e-68 261.5 272 50.4
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 1.1e-67 260.8 273 51.3
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 2.4e-67 259.6 271 50.6
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 5.3e-67 258.5 280 49.6
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 5.3e-67 258.5 280 50.0
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 6.9e-67 258.1 280 49.6
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 9.0e-67 257.7 279 49.8
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 3.4e-66 255.8 280 50.7
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 4.5e-66 255.4 263 50.2
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 4.5e-66 255.4 280 50.0
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 4.5e-66 255.4 280 49.6
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 7.6e-66 254.6 279 49.5
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 3.8e-65 252.3 283 47.3
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 4.9e-65 251.9 280 48.9
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 4.9e-65 251.9 280 48.6
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 4.9e-65 251.9 280 48.6
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 6.5e-65 251.5 282 48.6
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 8.4e-65 251.1 280 48.6
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.1e-64 250.8 254 48.4
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 1.4e-64 250.4 280 48.2
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 1.9e-64 250.0 272 48.9
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 2.5e-64 249.6 280 47.5
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 2.5e-64 249.6 281 48.4
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.5e-64 249.6 280 48.2
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 4.2e-64 248.8 275 48.7
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 5.5e-64 248.4 283 48.4
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 1.6e-63 246.9 279 47.7
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 1.6e-63 246.9 275 48.0
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 2.7e-63 246.1 280 45.4
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 2.7e-63 246.1 280 47.1
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 4.6e-63 245.4 264 48.5
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 4.6e-63 245.4 282 47.5
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 7.9e-63 244.6 280 47.1
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 7.9e-63 244.6 279 48.0
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.3e-62 243.8 278 45.0
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 1.3e-62 243.8 280 47.1
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 1.8e-62 243.4 279 48.4
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 2.3e-62 243.0 281 47.3
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 5.1e-62 241.9 280 46.8
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 8.7e-62 241.1 279 48.0
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 1.1e-61 240.7 280 47.5
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 9.6e-61 237.7 280 45.4
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 4.1e-59 232.3 265 46.0
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 6.9e-59 231.5 273 46.2
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 4.5e-58 228.8 280 45.0
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 8.4e-57 224.6 280 43.6
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 9.3e-56 221.1 274 45.3
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 1.8e-54 216.9 140 72.9
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 2.4e-51 206.5 277 41.2
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 2.0e-50 203.4 283 43.1
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 3.2e-48 196.1 214 50.5
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 1.1e-45 187.6 147 62.6
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 8.2e-44 181.4 120 73.3
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 4.7e-39 165.6 285 33.0
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 3.0e-38 162.9 142 59.2
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 4.8e-36 155.6 105 70.5
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 8.2e-36 154.8 274 35.4
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 2.4e-35 153.3 106 68.9
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 1.0e-33 147.9 202 40.1
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 1.4e-30 137.5 173 43.9
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 5.3e-27 125.6 75 74.7
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 5.0e-17 92.4 67 58.2
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 3.2e-16 89.7 134 39.6
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 4.4e-13 79.3 49 77.6


User provided reference genes

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