Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 2.8e-177 625.2 310 100.0
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 2.6e-167 592.0 348 86.8
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 2.8e-105 386.0 316 64.6
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 3.1e-104 382.5 336 62.2
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 7.2e-101 371.3 325 62.2
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 3.0e-99 365.9 325 61.5
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 4.1e-96 355.5 321 62.0
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 6.9e-96 354.8 315 61.6
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 1.4e-91 340.5 319 59.2
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 1.7e-89 333.6 383 51.2
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 2.9e-86 322.8 317 58.4
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 3.8e-86 322.4 256 67.6
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 2.7e-71 273.1 316 50.9
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 3.6e-68 262.7 318 49.4
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 8.8e-67 258.1 323 49.8
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 2.0e-66 256.9 317 48.6
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 3.4e-66 256.1 318 48.7
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 3.4e-66 256.1 319 49.2
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 9.8e-66 254.6 337 47.8
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 2.0e-63 246.9 327 45.9
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 8.6e-62 241.5 330 46.7
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 4.2e-61 239.2 313 46.6
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 2.1e-60 236.9 377 41.1
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 8.0e-60 235.0 336 45.5
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 2.3e-59 233.4 331 45.3
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 5.2e-59 232.3 330 43.6
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 5.2e-59 232.3 232 52.6
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 6.8e-59 231.9 327 46.2
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 8.9e-59 231.5 339 42.5
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 2.0e-58 230.3 197 59.9
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 2.0e-58 230.3 201 59.7
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 1.3e-57 227.6 204 58.3
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.3e-57 227.6 340 43.8
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 1.7e-57 227.3 340 43.5
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 2.2e-57 226.9 204 58.3
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 6.3e-57 225.3 377 42.2
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 1.4e-56 224.2 222 56.3
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 5.4e-56 222.2 354 42.4
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 5.9e-55 218.8 205 55.1
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 1.7e-54 217.2 278 48.6
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 1.5e-53 214.2 234 52.1
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 1.5e-53 214.2 233 47.2
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 1.9e-53 213.8 270 46.7
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 2.5e-53 213.4 270 46.3
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 3.3e-53 213.0 320 41.9
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 3.3e-53 213.0 311 45.0
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 4.3e-53 212.6 231 52.4
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 4.3e-53 212.6 177 59.9
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 5.6e-53 212.2 320 41.2
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 9.5e-53 211.5 356 41.3
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 2.8e-52 209.9 309 42.7
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 3.6e-52 209.5 360 39.2
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 3.6e-52 209.5 269 46.5
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 4.0e-51 206.1 299 43.5
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 6.8e-51 205.3 188 55.9
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 2.6e-50 203.4 171 57.9
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 3.4e-50 203.0 269 45.0
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 3.4e-50 203.0 195 55.4
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 5.8e-50 202.2 200 50.5
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 1.3e-49 201.1 347 39.8
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 3.7e-49 199.5 311 43.4
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 8.3e-49 198.4 315 41.0
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 1.4e-48 197.6 200 48.0
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 1.8e-48 197.2 268 43.3
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 2.4e-48 196.8 204 47.1
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 3.2e-48 196.4 163 58.9
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 4.1e-48 196.1 194 47.4
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 4.1e-48 196.1 204 45.6
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 4.1e-48 196.1 204 46.6
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 5.4e-48 195.7 204 46.6
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 9.2e-48 194.9 285 41.8
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 2.0e-47 193.7 196 53.1
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 2.0e-47 193.7 200 47.5
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 2.0e-47 193.7 203 51.2
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 2.7e-47 193.4 204 47.1
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 3.5e-47 193.0 245 42.4
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 4.6e-47 192.6 161 59.0
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 6.0e-47 192.2 200 48.0
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 6.0e-47 192.2 346 39.3
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 6.0e-47 192.2 203 50.2
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 7.8e-47 191.8 197 52.3
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 7.8e-47 191.8 202 51.0
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 1.3e-46 191.0 200 47.0
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 1.3e-46 191.0 202 50.5
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 8.6e-46 188.3 328 37.5
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 3.3e-45 186.4 202 52.0
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 9.5e-45 184.9 201 51.2
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 1.6e-44 184.1 202 48.5
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 1.6e-44 184.1 258 43.8
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 4.7e-44 182.6 152 61.2
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 8.0e-44 181.8 173 49.7
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 1.8e-43 180.6 210 49.0
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 1.8e-43 180.6 324 38.3
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 2.3e-43 180.3 203 47.3
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 5.2e-43 179.1 173 49.7
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 2.2e-41 173.7 260 40.4
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 1.9e-40 170.6 201 45.3
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 1.7e-38 164.1 119 65.5
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 2.1e-36 157.1 225 44.9
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 1.8e-35 154.1 158 55.1
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 2.4e-32 143.7 175 42.9
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 1.7e-30 137.5 172 41.3
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 5.1e-30 136.0 164 43.3
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 1.3e-25 121.3 121 47.1
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 2.4e-24 117.1 171 35.1
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 1.1e-19 101.7 224 35.7
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 1.3e-14 84.7 73 49.3
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 1.7e-14 84.3 184 27.7
Hma1.2p1_1094F.1_g256330 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 1.9e-08 64.3 80 45.0


User provided reference genes

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