Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-207 726.1 411 100.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 5.2e-200 701.0 410 97.1
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 9.3e-189 663.7 410 93.7
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.4e-104 384.0 436 55.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 8.6e-102 374.8 435 54.3
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.8e-100 369.8 438 53.4
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.0e-94 351.3 434 52.3
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 7.3e-93 345.1 437 57.7
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.8e-92 343.2 440 55.5
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.3e-91 340.1 436 53.7
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 5.2e-91 339.0 437 56.3
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.9e-88 330.5 449 51.7
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 4.6e-87 325.9 436 53.0
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.3e-86 324.3 449 50.8
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.9e-85 320.5 435 53.1
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.9e-81 306.6 436 51.4
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.6e-68 264.2 445 46.1
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.8e-67 260.8 442 43.9
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 2.4e-67 260.4 439 44.6
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 3.5e-63 246.5 454 45.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.6e-60 237.7 421 44.2
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.6e-60 237.7 447 45.0
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 3.1e-59 233.4 452 42.7
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 4.0e-59 233.0 442 44.1
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.5e-58 231.1 465 42.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.3e-57 228.0 441 43.5
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.8e-57 226.5 455 42.2
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 6.4e-57 225.7 426 39.9
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 6.4e-57 225.7 453 42.2
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.1e-56 224.9 448 42.0
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-56 224.9 441 43.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.4e-56 224.6 456 41.4
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.9e-56 224.2 426 39.7
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.4e-56 223.8 441 40.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 2.4e-56 223.8 426 39.7
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.2e-56 223.4 443 42.0
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.2e-56 223.0 454 45.4
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 2.7e-55 220.3 458 41.9
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 6.0e-55 219.2 431 38.7
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 6.0e-55 219.2 456 42.5
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.3e-54 218.0 428 42.3
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.8e-54 217.6 443 39.3
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 2.3e-54 217.2 430 42.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.3e-54 217.2 454 45.6
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.9e-53 214.2 411 43.8
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 2.5e-53 213.8 453 39.1
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 7.4e-53 212.2 451 40.4
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.3e-52 211.5 456 40.8
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.6e-52 211.1 430 40.9
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 3.7e-52 209.9 422 41.7
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.4e-51 208.0 295 49.8
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.8e-51 207.6 440 41.8
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.1e-51 206.8 447 40.5
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 5.8e-50 202.6 432 38.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 7.6e-50 202.2 461 41.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.3e-49 201.4 443 40.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.7e-49 201.1 445 41.6
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.7e-49 201.1 457 41.8
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.8e-49 199.9 461 36.2
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 6.5e-49 199.1 439 41.5
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 6.5e-49 199.1 449 38.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.1e-48 198.4 487 38.8
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.4e-48 198.0 350 40.9
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.9e-48 197.6 454 40.3
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.2e-48 196.8 448 40.2
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.2e-47 194.9 445 36.9
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.2e-47 194.9 445 35.3
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.2e-47 194.9 434 38.5
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 4.6e-47 193.0 442 38.5
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 7.9e-47 192.2 459 37.5
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.3e-46 191.4 418 41.4
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.1e-45 188.3 460 35.0
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.5e-45 187.2 437 38.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 4.3e-45 186.4 444 35.6
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.8e-44 183.0 427 36.5
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 8.2e-44 182.2 448 35.0
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 8.2e-44 182.2 451 36.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.1e-43 180.3 448 34.4
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 6.9e-43 179.1 441 38.3
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.2e-42 178.3 445 34.4
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.0e-42 177.6 443 35.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.0e-42 177.6 419 38.4
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.6e-42 177.2 452 35.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 6.5e-41 172.6 449 34.7
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 4.2e-40 169.9 378 37.3
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 9.3e-40 168.7 447 36.0
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.6e-39 166.4 426 35.7
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 6.1e-39 166.0 425 34.6
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.0e-38 165.2 445 33.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.3e-38 164.1 405 34.6
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 3.9e-38 163.3 438 34.9
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.1e-37 161.8 441 36.3
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.5e-37 161.4 467 36.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.5e-37 160.6 446 33.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.5e-37 160.6 436 35.3
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.3e-36 158.3 431 37.4
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.6e-36 157.9 426 33.8
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 6.3e-36 156.0 426 37.8
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.3e-36 156.0 448 35.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 8.2e-36 155.6 450 34.4
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 3.1e-35 153.7 437 37.3
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.1e-35 153.7 441 34.9
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 9.0e-35 152.1 415 33.3
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.4e-34 150.2 423 35.5
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 4.5e-34 149.8 430 33.3
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 7.7e-34 149.1 411 33.1
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 1.3e-33 148.3 455 34.5
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 5.0e-33 146.4 451 34.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 4.2e-32 143.3 420 32.6
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.5e-32 142.9 429 37.3
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 9.4e-32 142.1 441 31.3
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 2.1e-31 141.0 452 32.5
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 6.1e-31 139.4 421 35.4
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 3.0e-30 137.1 407 34.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 3.9e-30 136.7 435 32.2
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 5.1e-30 136.3 357 35.9
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.5e-29 134.8 408 31.6
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 2.0e-29 134.4 402 32.6
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 2.0e-29 134.4 324 38.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-29 134.0 402 30.8
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 3.3e-29 133.7 412 31.1
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 9.7e-29 132.1 410 31.2
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.3e-28 131.7 416 32.0
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.7e-28 131.3 84 75.0
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 2.4e-27 127.5 415 33.7
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 6.9e-27 125.9 428 34.3
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.9e-26 122.9 384 41.1
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.7e-25 121.3 420 31.4
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.7e-25 121.3 309 35.9
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 5.5e-24 116.3 136 47.8
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.1e-23 114.4 419 32.2
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.0e-22 112.1 414 32.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.8e-22 111.3 413 29.5
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.8e-22 111.3 73 69.9
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.5e-21 108.2 295 32.5
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.7e-21 105.5 372 30.9
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.3e-20 105.1 267 36.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.4e-19 101.7 400 27.8
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 3.1e-19 100.5 212 38.2
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 4.1e-19 100.1 138 50.7
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 7.0e-19 99.4 229 34.5
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.6e-18 98.2 404 29.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 3.5e-18 97.1 329 31.9
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.7e-17 94.7 290 31.0
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.2e-17 94.4 416 28.4
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.9e-17 94.0 326 28.8
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.9e-17 94.0 417 27.8
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 5.0e-17 93.2 209 41.6
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.2e-16 90.5 297 34.3
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 4.7e-15 86.7 431 26.2
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.0e-14 85.5 369 30.1
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.0e-14 83.6 441 28.1
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.3e-12 78.6 373 26.5
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-11 75.1 244 29.1
Glyma.U031301 Glycine max HOM05D062889 ORTHO05D004532 4.1e-11 73.6 164 35.4
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 5.3e-11 73.2 56 67.9
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.0e-09 68.9 79 44.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.7e-09 68.2 69 46.4
Glyma.03G074233 Glycine max HOM05D003987 ORTHO05D004532 1.7e-09 68.2 125 44.0
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 2.9e-09 67.4 419 24.8
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 8.5e-09 65.9 46 58.7
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.9e-08 64.7 354 30.2
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 3.2e-08 63.9 161 38.5
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.2e-08 63.9 283 26.5
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 7.2e-08 62.8 104 45.2
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 2.1e-07 61.2 65 47.7
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.7e-07 60.8 74 40.5
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.0e-06 57.4 208 26.9
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.2e-06 56.6 109 33.9
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 5.2e-06 56.6 302 27.2


User provided reference genes

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