Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 5.0e-140 501.1 257 100.0
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 2.4e-134 482.3 257 95.7
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.1e-86 323.9 257 69.6
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.1e-86 323.9 257 69.6
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.1e-82 309.7 260 66.5
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.1e-82 307.8 259 66.8
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 7.8e-77 291.2 261 64.4
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 3.3e-75 285.8 261 64.4
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 2.1e-74 283.1 282 59.9
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 5.6e-67 258.5 261 58.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.6e-66 256.9 257 58.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.6e-66 256.9 259 59.1
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 8.1e-66 254.6 265 57.7
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 5.2e-65 251.9 260 56.9
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 6.9e-65 251.5 256 55.9
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 6.9e-65 251.5 258 56.2
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.3e-63 247.3 259 57.1
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 8.4e-63 244.6 257 56.4
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.2e-61 240.7 262 53.8
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 2.7e-61 239.6 259 55.2
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 4.6e-61 238.8 257 54.5
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 7.8e-61 238.0 267 55.1
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.0e-60 237.7 268 54.1
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 3.0e-60 236.1 263 51.7
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 5.1e-60 235.3 269 55.0
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.9e-59 233.4 263 54.0
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 4.3e-59 232.3 258 55.4
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 9.6e-59 231.1 267 53.9
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 3.1e-57 226.1 262 52.3
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-56 224.2 262 53.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.0e-56 223.4 261 51.7
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.6e-56 223.0 257 53.3
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 2.6e-56 223.0 254 53.1
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.5e-56 222.2 152 79.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.6e-56 221.5 261 48.3
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.9e-55 219.5 261 47.9
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 4.9e-55 218.8 258 51.9
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-54 217.6 261 47.5
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.1e-54 217.6 255 51.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.4e-54 216.5 260 49.6
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.2e-54 216.1 262 48.1
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 4.2e-54 215.7 259 50.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.2e-53 214.2 262 47.7
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.6e-53 213.8 257 52.5
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 4.6e-53 212.2 257 48.6
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 7.9e-53 211.5 257 49.8
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.3e-52 210.7 261 50.6
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 5.1e-52 208.8 253 52.2
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 6.7e-52 208.4 260 50.8
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.9e-51 206.8 265 47.9
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.5e-51 206.5 269 49.8
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.3e-51 205.7 266 51.1
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 5.6e-51 205.3 260 48.8
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 7.4e-51 204.9 321 43.6
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 7.4e-51 204.9 266 50.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.8e-50 203.0 279 48.7
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 4.8e-50 202.2 246 50.4
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.8e-50 202.2 180 63.9
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.4e-49 200.7 255 47.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 3.1e-49 199.5 257 47.1
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 3.1e-49 199.5 266 48.1
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 5.3e-49 198.7 261 48.3
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.9e-49 198.4 255 48.6
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 2.0e-48 196.8 249 49.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.4e-48 196.1 258 46.9
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 5.8e-48 195.3 259 48.3
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 5.8e-48 195.3 260 46.9
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 9.9e-48 194.5 255 47.5
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 9.9e-48 194.5 255 47.5
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 9.9e-48 194.5 272 47.1
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 9.9e-48 194.5 257 45.5
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.3e-47 194.1 257 47.1
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 4.9e-47 192.2 246 49.6
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 6.4e-47 191.8 263 46.8
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 6.4e-47 191.8 263 46.8
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 6.4e-47 191.8 238 49.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.1e-46 191.0 261 46.4
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.4e-46 190.7 262 45.4
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.4e-46 190.7 265 46.0
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.9e-46 190.3 254 46.5
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.9e-46 190.3 252 42.9
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 3.2e-46 189.5 260 46.5
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.2e-46 189.1 263 46.0
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 4.2e-46 189.1 243 50.2
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 4.2e-46 189.1 213 53.5
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 5.5e-46 188.7 247 49.8
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 7.1e-46 188.3 258 47.3
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 9.3e-46 188.0 195 55.9
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.2e-45 187.6 254 46.1
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.2e-45 187.6 246 47.6
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.6e-45 187.2 264 46.2
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.3e-44 184.1 182 54.9
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.3e-44 184.1 284 45.1
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.8e-44 183.7 261 46.0
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 2.3e-44 183.3 265 46.8
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.3e-44 183.3 264 47.7
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 3.0e-44 183.0 171 57.9
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 5.1e-44 182.2 268 44.4
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 5.1e-44 182.2 262 45.0
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 8.7e-44 181.4 268 45.1
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.1e-43 181.0 262 48.9
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.9e-43 180.3 288 41.7
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.9e-43 180.3 165 57.6
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 3.3e-43 179.5 251 45.8
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 5.6e-43 178.7 139 66.9
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 9.6e-43 177.9 259 47.9
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 2.4e-41 173.3 248 47.6
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 9.0e-41 171.4 255 43.5
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 2.9e-39 166.4 253 43.9
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 4.9e-39 165.6 253 43.9
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 6.5e-39 165.2 261 43.3
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 6.5e-39 165.2 372 36.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.9e-38 163.7 242 45.5
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.2e-37 161.0 265 42.3
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.7e-37 159.8 270 41.5
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.5e-37 159.5 173 51.4
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 3.0e-36 156.4 251 41.4
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 3.9e-36 156.0 255 43.9
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 3.3e-35 152.9 89 91.0
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 7.4e-35 151.8 250 42.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 6.3e-34 148.7 146 54.8
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 3.1e-33 146.4 269 41.3
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.1e-33 146.4 366 32.2
arahy.Tifrunner.gnm1.ann1.LJH7P1 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-32 144.1 120 70.8
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 4.5e-32 142.5 172 48.8
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.7e-31 140.6 255 42.4
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.9e-31 139.8 154 51.9
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-30 137.9 277 39.4
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 7.2e-30 135.2 275 37.8
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 6.7e-28 128.6 142 50.7
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 7.7e-24 115.2 185 41.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.8e-23 112.8 151 48.3
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 5.5e-22 109.0 179 40.8
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.4e-20 104.4 123 52.8
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.5e-19 100.9 246 35.4
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-19 100.5 227 34.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.3e-18 97.8 252 32.5
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.8e-18 96.7 125 47.2
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.8e-18 96.7 131 46.6
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 4.8e-18 95.9 183 39.3
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.1e-17 94.7 64 71.9
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 3.1e-17 93.2 104 47.1
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.4e-16 89.7 134 41.8
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.0e-15 88.2 124 40.3
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 2.7e-13 80.1 210 32.9
Medtr3g104160 Medicago truncatula HOM05D004579 ORTHO05D005376 5.2e-12 75.9 79 57.0
Medtr3g104200 Medicago truncatula HOM05D004579 ORTHO05D005376 5.2e-12 75.9 121 43.8
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 8.8e-12 75.1 66 59.1
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 5.0e-07 59.3 47 57.4
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 5.0e-07 59.3 47 57.4
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 1.5e-06 57.8 88 46.6


User provided reference genes

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