Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 3.1e-165 585.1 300 100.0
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-162 576.6 300 98.3
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 6.9e-117 424.5 316 74.4
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.3e-115 420.2 314 72.9
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 7.9e-113 411.0 308 73.7
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 1.3e-112 410.2 300 75.0
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 2.3e-112 409.5 310 72.9
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.1e-111 407.1 305 70.8
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 4.8e-110 401.7 315 72.4
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.5e-108 396.7 308 71.4
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 7.2e-106 387.9 313 69.6
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 9.7e-103 377.5 312 67.3
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 6.9e-101 371.3 307 65.8
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 2.9e-99 365.9 287 74.2
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 3.8e-99 365.5 300 64.3
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 8.5e-99 364.4 317 62.5
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 4.2e-98 362.1 310 63.2
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 6.1e-97 358.2 311 62.4
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 1.4e-96 357.1 315 62.9
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 6.7e-96 354.8 311 61.7
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.0e-95 353.2 304 62.2
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 4.3e-95 352.1 313 62.3
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 5.7e-95 351.7 321 60.7
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 1.3e-94 350.5 211 79.1
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 2.2e-94 349.7 320 61.2
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 3.7e-94 349.0 316 62.3
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 4.8e-94 348.6 319 61.1
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 4.8e-94 348.6 301 63.8
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.1e-93 347.4 212 77.8
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.1e-93 347.4 214 76.2
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.1e-93 347.4 304 65.8
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.1e-93 347.4 306 61.4
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.4e-93 347.1 305 63.3
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.8e-93 346.7 314 61.8
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 2.4e-93 346.3 299 62.9
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 3.1e-93 345.9 309 63.1
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 3.1e-93 345.9 304 61.2
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 6.9e-93 344.7 307 60.6
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 9.1e-93 344.4 303 61.4
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 2.0e-92 343.2 307 60.9
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 4.5e-92 342.0 313 59.1
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.0e-91 340.9 223 74.4
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.3e-91 340.5 215 76.3
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.7e-91 340.1 214 74.3
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 2.2e-91 339.7 301 60.1
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 2.2e-91 339.7 301 63.8
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 3.8e-91 339.0 334 58.4
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 5.0e-91 338.6 302 60.9
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 5.0e-91 338.6 303 63.7
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 6.5e-91 338.2 300 61.3
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 6.5e-91 338.2 302 60.9
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.5e-91 338.2 302 60.9
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.5e-91 338.2 301 60.8
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 6.5e-91 338.2 315 61.0
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 4.2e-90 335.5 201 81.6
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 5.5e-90 335.1 319 56.7
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 7.2e-90 334.7 302 59.3
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.2e-89 334.0 312 59.6
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 4.7e-89 332.0 298 59.7
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 7.9e-89 331.3 317 58.4
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 7.9e-89 331.3 299 58.9
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 1.4e-88 330.5 294 59.5
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.8e-88 330.1 313 59.4
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.8e-88 330.1 303 59.4
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.3e-88 329.7 306 57.5
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 3.9e-88 328.9 300 59.0
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 8.8e-88 327.8 339 55.8
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 1.5e-87 327.0 309 57.0
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 2.6e-87 326.2 304 58.9
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 4.4e-87 325.5 303 57.8
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 4.4e-87 325.5 300 59.3
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 4.4e-87 325.5 300 59.3
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 4.4e-87 325.5 313 55.9
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 5.7e-87 325.1 228 70.6
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 1.7e-86 323.6 304 57.2
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 2.8e-86 322.8 306 58.5
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 2.8e-86 322.8 309 58.6
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 2.8e-86 322.8 301 58.5
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.7e-86 322.4 277 62.5
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 4.8e-86 322.0 300 58.0
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 8.2e-86 321.2 209 72.7
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 2.4e-85 319.7 300 57.7
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 2.4e-85 319.7 302 58.3
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 5.3e-85 318.5 305 59.0
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 5.3e-85 318.5 212 73.6
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 5.3e-85 318.5 318 57.5
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 1.2e-84 317.4 215 72.1
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 1.2e-84 317.4 307 55.7
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.6e-84 317.0 219 69.9
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.0e-84 316.6 305 58.7
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 2.0e-84 316.6 301 57.1
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 3.5e-84 315.8 238 66.0
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 1.3e-83 313.9 220 67.7
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 3.8e-83 312.4 211 72.0
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.8e-83 312.4 301 57.8
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 5.0e-83 312.0 301 56.5
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 1.5e-82 310.5 326 52.5
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 3.2e-82 309.3 210 71.4
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 7.2e-82 308.1 220 64.5
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 9.4e-82 307.8 211 70.6
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 9.4e-82 307.8 213 67.6
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.6e-81 307.0 257 69.6
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 2.7e-81 306.2 198 73.7
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 2.7e-81 306.2 189 77.8
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 4.7e-81 305.4 260 59.6
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 8.0e-81 304.7 211 68.7
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 4.0e-80 302.4 306 57.8
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 2.0e-79 300.1 211 70.1
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.8e-78 296.2 300 56.7
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 3.2e-74 282.7 300 55.0
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 1.2e-73 280.8 213 63.4
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.3e-70 270.8 273 54.6
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 9.1e-69 264.6 220 57.3
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 7.7e-68 261.5 209 56.9
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 2.1e-65 253.4 324 51.5
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 2.4e-61 240.0 230 52.2
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 7.0e-61 238.4 201 60.2
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 2.5e-58 229.9 164 68.9
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.6e-57 227.3 170 75.9
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 3.6e-57 226.1 191 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.3e-46 191.0 170 55.9
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.6e-41 174.1 144 61.8
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 3.6e-41 172.9 109 75.2
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.2e-39 167.9 189 47.1
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.2e-38 163.7 109 76.1
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 4.9e-38 162.5 83 92.8
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 7.1e-37 158.7 148 56.1
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 3.5e-36 156.4 211 39.8
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 2.0e-31 140.6 83 83.1
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 1.3e-30 137.9 68 95.6
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 7.1e-29 132.1 129 51.2
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 5.6e-26 122.5 144 39.6
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 1.6e-25 120.9 201 32.8
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 5.1e-19 99.4 57 84.2
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.4e-16 91.3 147 44.2
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 6.4e-14 82.4 83 55.4
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 7.1e-13 79.0 142 40.8
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 3.9e-11 73.2 144 37.5
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 9.6e-10 68.6 47 74.5
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 6.2e-09 65.9 31 93.5
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.2e-07 61.6 67 52.2
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 1.5e-07 61.2 28 96.4
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 2.0e-07 60.8 50 64.0
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 4.5e-07 59.7 37 73.0


User provided reference genes

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