Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 3.9e-235 817.8 413 100.0
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.6e-220 769.2 435 91.5
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.8e-163 579.7 410 73.4
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 5.7e-162 574.7 410 74.1
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 5.9e-159 564.7 412 72.8
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 7.9e-156 554.3 410 71.5
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 7.9e-156 554.3 410 71.5
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 3.0e-155 552.4 418 71.5
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 2.0e-154 549.7 410 69.8
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.3e-153 547.0 410 71.2
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 4.1e-152 542.0 410 69.5
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 8.9e-123 444.5 403 59.8
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.2e-122 444.1 422 56.6
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.2e-122 444.1 416 57.7
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.1e-120 437.6 410 58.3
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.2e-119 434.1 411 56.9
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 2.7e-119 433.0 410 59.0
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 4.6e-119 432.2 414 55.6
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.7e-118 430.3 418 56.9
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 3.9e-118 429.1 407 57.7
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 6.6e-118 428.3 407 58.5
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 1.5e-117 427.2 414 57.0
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.9e-117 426.8 410 57.3
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 5.6e-117 425.2 405 56.8
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 6.2e-116 421.8 410 56.6
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 6.8e-115 418.3 417 55.6
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 6.8e-115 418.3 411 57.7
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 9.8e-114 414.5 414 56.3
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.7e-113 413.7 414 56.0
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 6.4e-113 411.8 412 54.1
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 6.4e-113 411.8 414 55.1
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.1e-112 411.0 441 51.5
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 6.0e-111 405.2 419 53.2
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 3.9e-110 402.5 409 55.7
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 5.0e-110 402.1 409 55.3
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 5.0e-110 402.1 361 60.1
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 8.6e-110 401.4 411 52.3
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 8.6e-110 401.4 412 54.1
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.5e-109 400.6 412 53.6
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 9.5e-109 397.9 457 51.2
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.2e-108 397.5 411 53.8
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.6e-108 397.1 412 52.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.6e-108 397.1 408 53.9
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 2.1e-108 396.7 412 52.7
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 8.1e-108 394.8 483 47.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.1e-107 394.4 411 53.5
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.4e-107 394.0 411 53.5
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 5.2e-107 392.1 415 51.6
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 8.9e-107 391.3 409 52.6
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.6e-106 389.8 417 51.8
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.6e-106 389.8 464 50.0
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 8.3e-105 384.8 406 53.7
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.7e-102 377.1 365 55.6
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 3.3e-101 372.9 421 50.4
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.1e-99 367.9 408 52.2
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 6.8e-99 365.2 430 50.0
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 3.4e-98 362.8 375 54.9
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 5.8e-98 362.1 532 43.6
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 7.1e-96 355.1 410 49.3
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 1.2e-95 354.4 407 50.9
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.0e-94 351.3 414 48.3
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.5e-93 346.7 290 61.0
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 2.5e-93 346.7 427 49.6
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 9.6e-93 344.7 412 48.5
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 4.0e-91 339.3 331 56.5
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 1.5e-90 337.4 286 61.9
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.9e-89 333.2 291 59.1
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 2.4e-88 330.1 406 48.3
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 9.3e-88 328.2 285 57.9
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 9.3e-88 328.2 458 46.5
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 2.3e-86 323.6 330 55.8
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 3.0e-86 323.2 331 55.0
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 1.9e-85 320.5 310 57.7
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 3.3e-85 319.7 309 59.5
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 2.4e-83 313.5 428 44.6
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 3.1e-83 313.2 329 53.8
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 3.1e-83 313.2 313 56.5
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 5.3e-83 312.4 406 47.0
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.0e-82 310.5 318 54.1
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 2.9e-81 306.6 411 45.3
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 8.4e-81 305.1 316 53.8
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.9e-80 303.9 290 56.2
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.4e-80 302.4 313 55.0
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.1e-76 290.4 314 50.6
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 2.1e-76 290.4 455 41.8
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.0e-75 286.2 302 54.3
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 5.3e-75 285.8 428 40.9
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.5e-74 284.3 445 42.0
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 2.2e-73 280.4 315 51.4
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.4e-72 276.9 430 43.7
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 7.1e-72 275.4 309 52.4
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 4.6e-71 272.7 277 54.5
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.0e-70 271.6 326 50.3
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.3e-70 271.2 574 35.5
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 2.1e-68 263.8 291 50.5
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.2e-64 250.0 416 39.7
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 5.1e-62 242.7 465 36.6
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 2.5e-61 240.4 301 45.2
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 3.3e-61 240.0 297 46.8
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.7e-60 236.5 421 40.4
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.2e-55 221.5 300 44.3
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 4.1e-51 206.5 267 41.6
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.5e-50 203.0 153 67.3
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.4e-48 198.0 261 45.2
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.4e-48 198.0 187 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.6e-47 194.5 318 42.1
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.2e-42 178.3 402 34.3
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.9e-40 171.0 235 45.1
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 6.7e-38 162.5 307 39.1
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.0e-37 161.0 346 35.3
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 1.0e-33 148.7 97 72.2
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 5.5e-32 142.9 94 73.4
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 4.0e-30 136.7 285 33.3
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.2e-23 115.2 77 68.8
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 1.8e-22 111.3 86 62.8
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 2.3e-22 110.9 77 72.7
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 1.7e-20 104.8 65 76.9
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.3e-17 95.1 116 45.7
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 2.8e-15 87.4 65 60.0
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.4e-14 85.1 218 32.1
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 8.8e-14 82.4 89 52.8
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.5e-13 81.6 61 62.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 5.7e-13 79.7 244 29.9
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 6.6e-09 66.2 58 60.3
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.9e-08 64.7 71 47.9
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 3.0e-06 57.4 83 41.0
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.2e-06 56.6 95 36.8


User provided reference genes

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