Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 4432.1 2218 100.0
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 4376.6 2218 98.6
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 3313.9 2234 76.5
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 3264.6 2235 75.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 3249.9 2234 75.2
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 3216.4 2237 74.8
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 3214.1 2230 74.6
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 3196.4 2227 74.3
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 3192.1 2232 74.6
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 3183.7 2231 74.3
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 3164.8 2231 74.0
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2772.3 2244 64.5
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2760.7 2238 64.8
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2753.4 2238 64.6
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2708.7 2241 63.9
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2693.3 2242 63.3
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2674.8 2243 63.0
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2674.8 2241 62.9
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2670.2 2239 63.1
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2650.5 2243 62.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2647.1 2234 62.4
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2644.8 2249 62.5
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2638.2 2242 62.4
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2623.2 2242 61.7
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2615.5 2239 61.5
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2615.1 2252 61.9
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2614.0 2247 60.9
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2602.4 2232 61.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2600.9 2231 61.5
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2587.4 2254 61.1
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2564.3 2243 60.5
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2560.8 2244 60.7
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2554.2 2257 60.4
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2548.9 2247 59.9
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2547.3 2243 60.2
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2540.4 2251 59.7
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2533.4 2238 59.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2533.1 2244 60.3
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2521.1 2239 59.2
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2507.2 2238 59.1
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2475.3 2242 58.7
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2475.3 2241 59.1
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2471.8 2217 59.8
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2458.3 2228 58.9
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2446.4 2235 59.1
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2442.2 2248 58.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2431.0 2243 58.0
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2427.5 2237 57.7
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2417.1 2243 58.1
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2405.6 2233 57.2
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2394.4 2234 57.7
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2392.8 2235 57.1
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2390.1 2244 57.9
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2386.3 2259 57.2
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2384.8 2241 57.0
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2382.1 2242 57.6
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2376.3 2264 56.7
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2364.3 2237 57.2
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2360.9 2229 57.9
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2354.7 2237 57.6
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2354.7 2233 56.1
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2350.1 2262 56.9
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2343.9 2226 57.1
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2340.1 2250 55.7
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2329.3 2229 56.0
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2319.7 2231 56.3
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2310.0 2244 55.9
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2302.7 2233 56.7
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2301.9 2226 55.8
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2298.5 2226 55.8
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2295.8 2225 55.7
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2293.5 1833 65.4
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2289.2 2225 55.6
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2289.2 2225 55.6
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2287.7 2224 55.6
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2286.1 2232 55.6
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2286.1 2232 55.6
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2276.9 1890 63.2
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2254.6 1827 63.8
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2231.8 1831 63.7
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2197.2 2246 54.2
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2167.9 2226 53.8
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2146.3 2055 56.9
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2121.7 2324 51.6
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2103.6 2298 51.5
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2090.5 1715 63.5
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2024.6 2253 50.6
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2011.9 2239 51.6
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1848.6 2216 48.2
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1770.0 1427 65.5
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1737.2 2393 44.0
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1566.2 1701 51.7
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1528.8 1156 71.0
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1470.7 1375 57.3
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1433.3 2343 39.8
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1419.1 2344 39.3
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1339.3 2204 40.1
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1307.0 2266 38.0
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1256.9 1205 56.3
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1221.5 1034 61.7
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1129.0 949 62.9
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1086.6 1066 55.4
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.5e-306 1056.2 1425 45.2
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 4.6e-258 896.3 785 60.6
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.7e-257 894.4 2468 29.9
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.1e-251 875.2 1019 50.2
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 1.6e-226 791.6 869 49.6
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.4e-211 741.9 706 56.4
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.1e-206 725.7 1342 37.4
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 2.8e-175 621.3 1004 40.0
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.9e-150 538.9 2488 25.8
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 2.6e-136 491.9 437 54.9
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.1e-97 363.6 385 53.8
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 8.0e-77 294.3 327 49.8
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 3.9e-76 292.0 288 58.7
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.5e-70 272.7 315 49.2
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.6e-64 253.4 327 45.3
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 7.7e-64 251.1 762 28.1
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.7e-58 233.4 231 52.8
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-57 230.3 244 50.8
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 1.1e-54 220.7 138 80.4
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.0e-51 209.9 175 64.6
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 4.9e-50 205.3 280 42.5
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 8.6e-39 167.9 114 78.9
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.1e-37 163.3 231 42.0
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.2e-35 157.5 493 28.6
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.7e-34 153.7 104 75.0
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 3.0e-31 142.9 110 71.8
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.1e-30 141.0 288 35.1
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.6e-29 136.0 112 57.1
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 4.9e-26 125.6 144 47.9
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 3.9e-15 89.4 107 43.0
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 4.4e-11 75.9 337 22.6


User provided reference genes

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