Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.4e-62 242.7 117 100.0
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 5.1e-15 84.7 84 58.3
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 2.9e-10 68.9 34 94.1
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 4.9e-10 68.2 34 91.2
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 6.4e-10 67.8 33 93.9
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 6.4e-10 67.8 36 86.1
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 8.3e-10 67.4 34 91.2
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 8.3e-10 67.4 32 96.9
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 1.1e-09 67.0 34 88.2
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.1e-09 67.0 33 90.9
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 1.4e-09 66.6 33 93.9
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.9e-09 66.2 32 93.8
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 2.4e-09 65.9 33 90.9
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 2.4e-09 65.9 31 96.8
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 3.2e-09 65.5 33 90.9
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 3.2e-09 65.5 31 96.8
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.2e-09 65.5 31 96.8
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.2e-09 65.5 31 96.8
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.2e-09 65.5 31 96.8
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 3.2e-09 65.5 31 96.8
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 3.2e-09 65.5 31 96.8
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 3.2e-09 65.5 31 96.8
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.2e-09 65.5 31 96.8
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 3.2e-09 65.5 31 96.8
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 3.2e-09 65.5 31 96.8
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 4.1e-09 65.1 33 87.9
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 5.4e-09 64.7 31 93.5
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 5.4e-09 64.7 31 93.5
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 5.4e-09 64.7 31 93.5
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 5.4e-09 64.7 47 68.1
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 5.4e-09 64.7 31 93.5
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 5.4e-09 64.7 31 93.5
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 5.4e-09 64.7 32 90.6
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 5.4e-09 64.7 32 90.6
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 5.4e-09 64.7 31 93.5
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 5.4e-09 64.7 31 93.5
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 5.4e-09 64.7 31 93.5
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 7.1e-09 64.3 31 93.5
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 7.1e-09 64.3 31 93.5
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 9.2e-09 63.9 31 93.5
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 9.2e-09 63.9 30 96.7
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.2e-08 63.5 31 90.3
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 1.6e-08 63.2 31 93.5
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.6e-08 63.2 31 93.5
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 2.7e-08 62.4 31 90.3
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 2.7e-08 62.4 29 96.6
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 4.6e-08 61.6 41 73.2
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 1.3e-07 60.1 32 87.5
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 2.3e-07 59.3 32 84.4
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 3.0e-07 58.9 66 50.0
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 3.9e-07 58.5 31 87.1
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 3.9e-07 58.5 31 87.1
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.9e-07 58.5 31 87.1
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 5.1e-07 58.2 31 87.1
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 5.1e-07 58.2 27 96.3
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 6.6e-07 57.8 30 90.0
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-06 57.0 34 76.5
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-06 57.0 34 76.5
Medtr6g070990 Medicago truncatula HOM05D007699 ORTHO05D009796 1.9e-06 56.2 28 92.9
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 2.5e-06 55.8 26 96.2
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 2.5e-06 55.8 26 96.2
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.5e-06 55.8 26 96.2
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.5e-06 55.8 26 96.2
arahy.Tifrunner.gnm1.ann1.GN8X5U Arachis hypogaea HOM05D007699 ORTHO05D085368 5.6e-06 54.7 32 84.4
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 5.6e-06 54.7 32 78.1


User provided reference genes

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