Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 0.0e+00 1566.6 835 100.0
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 0.0e+00 1191.0 850 79.1
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 3.2e-228 795.8 559 72.1
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.6e-222 776.2 561 71.1
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.4e-220 769.6 561 70.2
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 7.1e-220 768.1 558 71.7
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 6.0e-219 765.0 559 70.7
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.5e-217 760.4 559 69.9
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 5.6e-217 758.4 559 70.1
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 9.9e-214 747.7 559 69.8
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.7e-213 746.9 595 66.6
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 2.2e-213 746.5 559 69.4
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 2.9e-213 746.1 564 68.1
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.5e-185 653.3 560 59.5
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 5.7e-185 652.1 566 59.0
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.9e-182 642.1 562 60.5
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 2.9e-181 639.8 562 60.5
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 8.5e-181 638.3 562 59.3
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 4.2e-180 636.0 563 59.7
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.3e-178 630.2 563 59.5
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 5.3e-175 619.0 563 58.1
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.0e-174 617.1 563 59.3
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 7.7e-174 615.1 562 58.0
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.3e-173 614.4 567 57.3
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.1e-172 611.3 563 58.4
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.2e-172 609.8 565 56.1
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 7.2e-172 608.6 559 57.1
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.7e-171 606.7 564 57.3
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 4.7e-171 605.9 564 57.1
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.0e-170 604.7 565 57.0
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 5.1e-170 602.4 569 56.6
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 6.7e-170 602.1 564 57.6
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 8.8e-170 601.7 559 57.2
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 8.8e-170 601.7 558 57.5
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 3.3e-169 599.7 565 56.5
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 4.4e-169 599.4 559 58.1
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 7.4e-169 598.6 567 56.4
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.3e-168 597.8 560 57.3
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 4.1e-167 592.8 525 60.2
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 3.4e-166 589.7 567 54.3
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 4.5e-166 589.3 592 54.2
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 2.5e-164 583.6 557 56.6
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 3.2e-164 583.2 558 54.3
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 7.2e-164 582.0 565 55.6
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.5e-161 574.3 609 52.2
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.0e-161 573.9 513 59.5
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.7e-160 570.9 562 55.7
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 2.4e-159 567.0 558 52.9
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 2.0e-158 563.9 565 53.5
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.0e-157 561.6 562 54.6
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.3e-157 561.2 565 54.5
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.7e-157 560.8 565 53.3
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 2.2e-157 560.5 580 54.7
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 3.2e-156 556.6 548 52.9
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 8.8e-154 548.5 531 56.5
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.2e-153 548.1 564 52.0
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.7e-153 545.8 565 52.2
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.3e-152 544.7 507 56.6
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.7e-152 543.1 520 56.3
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 6.3e-152 542.3 569 51.7
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.1e-151 541.6 574 52.1
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 9.1e-151 538.5 568 52.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 9.1e-151 538.5 573 51.3
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 4.5e-150 536.2 567 51.7
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 5.9e-150 535.8 562 51.6
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 5.9e-150 535.8 568 51.4
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.0e-149 535.0 570 51.8
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 2.2e-149 533.9 572 51.4
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 3.2e-148 530.0 571 51.0
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 5.5e-148 529.3 567 51.5
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 2.1e-147 527.3 563 50.4
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.7e-147 526.9 582 51.4
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 3.6e-147 526.6 563 51.7
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.6e-147 526.6 566 50.2
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.8e-146 524.2 556 51.4
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.3e-146 523.9 475 56.8
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 5.2e-146 522.7 563 49.4
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 5.2e-146 522.7 573 50.6
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.6e-145 520.4 564 51.2
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 3.4e-145 520.0 562 51.1
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 3.4e-145 520.0 557 50.3
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 7.5e-145 518.8 579 49.7
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 9.8e-145 518.5 560 50.5
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.3e-144 518.1 564 50.9
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.3e-144 518.1 513 55.2
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.7e-144 516.5 568 50.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 4.8e-144 516.2 510 56.5
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.8e-144 516.2 563 49.7
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 8.3e-144 515.4 564 50.2
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.1e-143 515.0 564 49.3
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.1e-143 515.0 564 49.3
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.1e-143 515.0 577 49.4
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.4e-143 514.6 561 51.7
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 3.1e-143 513.5 564 49.1
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 4.1e-143 513.1 528 53.2
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 9.1e-143 511.9 562 49.8
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 9.1e-143 511.9 451 60.3
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.6e-142 511.1 561 50.1
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 3.5e-142 510.0 562 49.6
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 4.5e-142 509.6 565 49.2
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 4.5e-142 509.6 565 49.2
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 4.5e-142 509.6 561 50.8
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 5.9e-142 509.2 497 55.9
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 1.7e-141 507.7 566 48.8
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.9e-140 504.2 526 52.7
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.3e-140 503.4 565 49.2
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 3.6e-139 500.0 500 53.4
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.0e-138 498.4 637 48.2
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.4e-138 498.0 528 54.0
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 8.9e-138 495.4 599 47.1
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 3.4e-137 493.4 525 51.8
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 4.4e-137 493.0 581 48.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 9.8e-137 491.9 560 48.6
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 7.0e-135 485.7 531 51.6
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 4.3e-132 476.5 561 47.6
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 7.3e-132 475.7 421 58.2
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 5.8e-129 466.1 584 47.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 2.2e-128 464.2 414 55.6
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 4.1e-127 459.9 420 58.1
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 4.6e-126 456.4 596 47.3
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.3e-125 454.1 423 56.7
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.3e-125 454.1 589 46.0
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 6.6e-125 452.6 491 51.1
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.3e-124 449.9 353 69.7
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 9.8e-121 438.7 560 45.9
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.4e-119 434.1 471 50.1
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 5.0e-117 426.4 461 50.5
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.6e-113 414.1 474 47.3
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.6e-113 414.1 474 47.3
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 2.2e-112 411.0 547 45.2
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 1.5e-108 398.3 497 47.3
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 3.3e-108 397.1 422 50.7
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 1.4e-106 391.7 367 54.2
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 2.1e-102 377.9 600 40.8
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 7.1e-95 352.8 569 40.9
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 6.2e-91 339.7 646 38.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.8e-82 311.6 453 43.9
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.9e-78 296.2 562 36.7
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.6e-57 228.0 454 37.0
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 7.2e-55 219.9 172 59.3
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 2.0e-52 211.8 160 62.5
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 9.4e-47 193.0 195 47.7
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.3e-34 150.6 219 44.7
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 5.4e-26 124.0 163 35.6
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.0e-16 90.9 155 38.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.4e-12 78.2 64 56.2
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 2.7e-09 68.6 125 38.4
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 8.6e-08 63.5 36 77.8
arahy.Tifrunner.gnm1.ann1.F9YKNC Arachis hypogaea HOM05D023695 ORTHO05D086401 1.1e-07 63.2 78 59.0
arahy.Tifrunner.gnm1.ann1.VZM0D5 Arachis hypogaea HOM05D023695 ORTHO05D087382 1.1e-07 63.2 78 59.0
arahy.Tifrunner.gnm1.ann1.J41W4N Arachis hypogaea HOM05D023695 ORTHO05D084310 1.9e-07 62.4 78 59.0
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-07 61.6 39 66.7
arahy.Tifrunner.gnm1.ann1.E94TIA Arachis hypogaea HOM05D023695 ORTHO05D082601 5.6e-07 60.8 78 57.7
arahy.Tifrunner.gnm1.ann1.56Q8GI Arachis hypogaea HOM05D048521 ORTHO05D084284 1.2e-06 59.7 127 38.6


User provided reference genes

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