Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1578.1 861 100.0
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1538.5 861 98.4
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1335.9 855 84.0
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1327.0 855 83.3
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1322.8 855 82.7
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1314.7 845 85.4
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1295.0 855 83.2
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1291.9 855 83.4
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1287.3 855 83.0
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1271.1 851 82.8
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1254.2 855 81.6
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1243.0 846 78.4
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1240.7 860 77.6
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1238.0 864 78.8
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1230.7 836 79.3
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1229.2 836 79.2
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1227.6 836 79.4
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1227.2 836 78.8
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1222.2 836 78.9
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1221.8 859 78.3
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1221.1 836 78.8
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1221.1 853 76.9
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1203.7 842 79.6
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1203.0 855 77.8
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1202.6 857 77.9
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1195.6 842 76.5
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1193.7 804 78.2
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1191.8 854 74.8
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1190.3 854 77.5
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1189.5 855 77.4
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1182.5 854 77.3
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1181.0 849 76.9
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1181.0 854 74.9
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1179.9 851 76.7
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1176.0 822 77.7
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1174.8 945 70.5
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1173.3 864 76.3
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1172.9 854 76.9
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1169.8 856 76.5
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1169.8 849 74.9
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1169.5 843 74.7
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1166.8 809 77.3
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1161.0 849 75.6
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1156.7 847 75.6
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1154.0 843 72.8
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1150.2 879 74.4
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 857 72.2
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1146.0 855 73.3
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1145.2 852 72.3
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1142.9 857 72.0
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 850 74.6
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1141.7 848 75.9
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1139.0 857 71.9
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1137.1 846 73.8
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 849 73.1
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1131.7 864 74.1
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1126.7 842 73.6
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1125.2 850 72.4
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1124.0 856 72.9
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1123.2 850 73.9
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1121.7 844 72.0
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1121.7 835 72.9
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1119.4 847 73.1
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1117.8 837 73.4
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1117.8 839 72.8
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1117.1 850 69.9
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 845 73.0
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 853 70.2
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1110.1 853 71.7
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1110.1 833 72.9
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1109.7 829 73.0
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1106.3 875 69.6
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 859 73.2
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 841 71.3
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 829 73.0
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 843 72.0
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1104.0 862 70.1
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 829 72.9
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1101.7 859 72.9
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 841 71.2
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 840 71.3
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1099.0 848 71.7
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1098.2 900 67.7
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1094.3 845 70.1
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1091.3 859 69.6
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 0.0e+00 1085.5 842 69.8
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1083.6 845 70.4
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 7.6e-310 1067.0 850 70.4
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 1.7e-309 1065.8 896 66.0
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 3.2e-308 1061.6 843 68.3
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 4.6e-307 1057.7 843 69.3
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 6.7e-306 1053.9 747 74.4
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 4.5e-302 1041.2 851 67.5
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 5.6e-297 1024.2 683 76.3
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 1.2e-291 1006.5 685 75.2
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 5.7e-289 997.7 829 63.3
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 4.1e-287 991.5 658 77.7
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 1.2e-286 989.9 848 64.4
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 2.2e-285 985.7 774 70.2
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 3.8e-285 984.9 658 77.2
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 4.8e-280 968.0 833 65.4
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 1.9e-276 956.1 641 76.1
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.6e-275 953.0 838 62.3
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 2.0e-273 946.0 642 76.6
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 3.1e-271 938.7 952 59.2
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 2.9e-269 932.2 844 63.2
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.3e-264 916.8 813 59.0
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 6.7e-258 894.4 583 77.7
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 7.5e-249 864.4 842 54.9
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.7e-248 863.2 845 55.5
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 8.0e-243 844.3 803 55.5
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.8e-226 790.0 853 57.6
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 2.4e-223 779.6 810 51.4
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 2.1e-222 776.5 853 56.7
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 4.0e-202 709.1 430 83.5
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.4e-167 594.3 477 66.9
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.9e-160 570.1 440 69.8
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 3.7e-139 500.0 337 78.0
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.9e-128 463.8 313 73.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 4.2e-127 459.9 794 36.1
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.8e-122 444.5 376 73.7
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.5e-121 440.3 265 83.0
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.9e-120 437.2 803 36.2
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.7e-112 411.4 406 58.4
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 6.4e-99 366.3 881 31.2
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.5e-81 307.4 282 62.4
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.3e-70 272.3 386 50.5
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 8.4e-67 259.6 232 65.9
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.0e-51 207.2 135 76.3
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 5.5e-50 203.8 195 59.5
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 6.5e-43 180.3 142 71.1
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 6.5e-43 180.3 129 72.9
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 2.2e-35 155.2 121 71.9
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-34 151.8 150 55.3
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.2e-34 151.4 150 55.3
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.5e-34 150.6 158 56.3
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 5.0e-19 100.9 66 80.3
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.5e-10 72.8 73 56.2


User provided reference genes

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