Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 3.9e-81 304.7 148 100.0
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 3.9e-81 304.7 148 100.0
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 7.2e-75 283.9 148 90.5
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 7.9e-74 280.4 148 87.8
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 1.8e-73 279.3 148 88.5
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 5.1e-73 277.7 148 87.8
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 1.7e-71 272.7 148 86.5
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 4.8e-71 271.2 148 85.8
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 3.6e-66 255.0 148 83.1
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 1.4e-65 253.1 148 84.5
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 6.7e-65 250.8 148 81.8
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 2.6e-64 248.8 148 77.7
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 3.7e-63 245.0 148 77.0
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 8.2e-63 243.8 148 80.4
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 8.2e-63 243.8 148 80.4
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 4.1e-62 241.5 148 74.3
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 5.9e-61 237.7 148 73.6
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 5.9e-61 237.7 148 74.3
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.3e-60 236.5 148 71.6
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 2.9e-60 235.3 148 73.6
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 5.0e-60 234.6 148 73.0
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 5.0e-60 234.6 145 74.5
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 5.0e-60 234.6 147 72.8
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 5.0e-60 234.6 148 73.6
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 1.5e-59 233.0 148 71.6
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 2.5e-59 232.3 148 70.9
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 7.2e-59 230.7 148 73.6
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 9.4e-59 230.3 148 69.6
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 9.4e-59 230.3 148 69.6
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 1.6e-58 229.6 148 69.6
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 4.7e-58 228.0 148 74.3
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 6.1e-58 227.6 148 71.6
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 1.0e-57 226.9 148 70.3
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.0e-57 226.9 144 72.9
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 1.4e-57 226.5 148 72.3
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 1.4e-57 226.5 148 70.9
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.4e-57 226.5 148 70.9
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 1.4e-57 226.5 148 70.3
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.8e-57 226.1 145 71.0
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 3.0e-57 225.3 148 69.6
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 8.8e-57 223.8 136 75.7
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 8.8e-57 223.8 148 69.6
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 2.0e-56 222.6 148 68.9
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 2.0e-56 222.6 148 70.3
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 4.4e-56 221.5 148 70.3
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 4.4e-56 221.5 148 68.2
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 4.4e-56 221.5 148 69.6
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 4.4e-56 221.5 168 63.7
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 4.4e-56 221.5 146 67.1
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 7.5e-56 220.7 148 68.9
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 7.5e-56 220.7 148 69.6
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 9.7e-56 220.3 148 70.3
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.7e-55 219.5 172 62.2
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 2.2e-55 219.2 213 54.0
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 2.2e-55 219.2 148 68.9
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 2.8e-55 218.8 154 68.8
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 3.7e-55 218.4 148 68.2
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 3.7e-55 218.4 146 67.1
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 8.2e-55 217.2 149 69.8
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 68.2
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 1.4e-54 216.5 148 68.2
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 1.8e-54 216.1 172 61.0
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 2.4e-54 215.7 149 71.1
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 4.1e-54 214.9 148 68.2
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.2e-53 213.4 146 65.8
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 1.2e-53 213.4 146 67.8
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 1.6e-53 213.0 149 67.1
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 1.6e-53 213.0 149 67.1
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 1.6e-53 213.0 149 67.1
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 1.6e-53 213.0 153 68.0
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 1.6e-53 213.0 149 66.4
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 2.0e-53 212.6 186 58.1
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 4.5e-53 211.5 171 62.0
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 5.9e-53 211.1 148 65.5
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 1.3e-52 209.9 149 64.4
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 1.7e-52 209.5 146 65.8
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 1.7e-52 209.5 149 65.8
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 2.2e-52 209.1 146 66.4
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 8.5e-52 207.2 146 64.4
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 1.1e-51 206.8 146 65.1
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 2.5e-51 205.7 136 70.6
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 9.4e-51 203.8 151 63.6
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 1.6e-50 203.0 149 65.8
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 6.1e-50 201.1 165 60.6
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 1.4e-49 199.9 148 62.8
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 6.8e-49 197.6 144 63.2
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 2.6e-48 195.7 148 61.5
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 4.4e-48 194.9 130 69.2
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 9.8e-48 193.7 131 67.9
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 2.2e-47 192.6 147 62.6
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 1.1e-46 190.3 174 54.0
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 5.4e-46 188.0 120 70.0
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 1.6e-42 176.4 145 53.1
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 8.0e-42 174.1 111 75.7
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 2.0e-37 159.5 104 69.2
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 5.9e-37 157.9 119 58.0
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 7.5e-32 141.0 104 66.3
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.7e-31 139.8 148 50.7
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 1.0e-28 130.6 94 61.7
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 2.8e-26 122.5 101 54.5
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.1e-25 119.0 82 70.7
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 9.8e-24 114.0 135 35.6
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 2.5e-19 99.4 103 54.4
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 7.3e-19 97.8 122 47.5
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 1.2e-18 97.1 76 57.9
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.6e-18 96.7 66 69.7
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 1.2e-16 90.5 66 71.2
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 5.8e-16 88.2 65 63.1
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 9.9e-16 87.4 64 64.1
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 1.7e-15 86.7 151 32.5
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 2.9e-15 85.9 45 80.0
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 5.4e-14 81.6 140 30.0
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 1.1e-11 73.9 44 86.4
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 2.5e-11 72.8 65 50.8
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 7.3e-11 71.2 38 86.8
Eucgr.E01843 Eucalyptus grandis HOM05D007311 ORTHO05D009011 4.2e-06 55.5 47 46.8


User provided reference genes

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