Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 5.8e-147 524.2 272 100.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.9e-146 521.9 272 99.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.2e-98 362.8 295 67.1
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 6.5e-98 361.3 291 67.0
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.0e-95 354.0 286 67.1
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.0e-95 354.0 286 67.1
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.3e-95 352.8 289 70.2
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.1e-92 342.4 289 67.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 4.8e-85 318.5 288 64.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.6e-83 313.5 286 63.3
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 7.7e-83 311.2 297 60.9
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.7e-82 310.1 264 64.8
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 4.2e-81 305.4 288 61.8
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 9.4e-81 304.3 282 58.9
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.8e-79 300.1 321 54.5
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 5.2e-79 298.5 284 60.2
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.0e-75 286.6 284 56.0
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 3.5e-75 285.8 282 56.7
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.1e-73 280.8 284 56.3
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 9.4e-73 277.7 289 56.1
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.4e-71 273.9 289 55.4
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 5.2e-71 271.9 289 56.1
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.2e-70 270.8 280 54.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.8e-69 266.2 282 54.3
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 8.3e-69 264.6 284 54.2
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 8.3e-69 264.6 284 54.2
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 8.3e-69 264.6 283 53.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 7.0e-68 261.5 289 53.3
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 9.2e-68 261.2 289 53.3
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.2e-67 260.8 289 52.9
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.7e-67 259.6 257 56.0
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 5.0e-66 255.4 290 54.5
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 7.3e-65 251.5 253 57.3
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.2e-64 250.8 293 52.2
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.6e-64 250.4 284 52.5
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 1.6e-64 250.4 283 52.7
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.8e-64 249.6 256 56.2
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 4.7e-64 248.8 256 57.4
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.4e-63 247.3 283 52.3
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.4e-63 247.3 284 50.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.7e-61 240.4 256 54.3
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.7e-61 240.4 288 50.7
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 6.4e-61 238.4 208 62.0
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.1e-60 237.7 284 48.9
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 2.4e-60 236.5 202 61.4
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.1e-60 235.7 337 43.3
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 2.0e-59 233.4 286 49.7
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.0e-58 229.6 286 49.7
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.5e-57 227.3 284 50.0
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.9e-57 226.9 275 51.6
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.0e-55 221.1 311 45.7
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.0e-55 221.1 311 45.7
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.5e-54 217.2 289 46.7
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.0e-54 216.9 388 39.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.3e-53 214.2 256 52.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.4e-52 210.7 287 44.3
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 1.9e-52 210.3 288 45.1
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 3.2e-52 209.5 208 55.3
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 5.4e-52 208.8 400 37.0
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.2e-51 207.6 202 55.9
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 7.8e-51 204.9 221 51.1
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 5.6e-49 198.7 202 53.0
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.8e-48 196.4 284 43.0
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 4.7e-48 195.7 235 49.4
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.0e-46 190.3 278 42.1
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.7e-45 187.2 276 45.7
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.7e-45 187.2 287 42.5
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.7e-45 187.2 294 42.2
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 2.9e-45 186.4 235 47.7
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.9e-44 183.7 235 46.8
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 9.2e-44 181.4 280 42.5
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 6.6e-42 175.3 213 48.8
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.1e-41 174.5 281 42.0
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-41 174.5 289 41.5
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.1e-41 174.5 204 49.5
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.1e-41 174.5 205 45.9
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 7.3e-41 171.8 293 40.6
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 7.3e-41 171.8 293 40.6
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 9.5e-41 171.4 262 44.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.2e-40 171.0 293 41.0
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 2.1e-40 170.2 204 48.5
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.6e-40 169.5 290 38.3
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.6e-40 169.5 305 38.7
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 4.7e-40 169.1 293 40.3
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.4e-39 167.5 283 40.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 2.3e-39 166.8 289 38.4
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 3.1e-39 166.4 294 38.1
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 5.2e-39 165.6 293 39.9
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 8.9e-39 164.9 306 38.9
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.2e-38 164.5 299 39.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 1.5e-38 164.1 295 39.3
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 5.8e-38 162.2 212 47.6
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.2e-37 160.2 276 40.2
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 8.4e-37 158.3 291 37.5
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.9e-36 157.1 264 40.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 9.2e-36 154.8 302 38.1
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 3.5e-35 152.9 259 40.9
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.5e-35 152.9 156 54.5
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 4.6e-35 152.5 272 39.0
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.2e-32 144.4 186 47.3
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.8e-32 143.3 293 36.5
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.8e-32 143.3 278 36.7
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 8.1e-32 141.7 285 35.4
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 8.1e-32 141.7 168 50.0
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.4e-31 141.0 220 43.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 8.9e-31 138.3 246 38.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.5e-30 137.5 302 36.4
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 7.6e-30 135.2 195 41.5
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 8.4e-29 131.7 260 38.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 8.4e-29 131.7 309 35.6
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 4.2e-28 129.4 295 33.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.6e-27 127.5 295 33.6
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.6e-27 127.5 285 36.5
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.7e-27 126.7 272 33.5
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 4.6e-27 125.9 278 36.0
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 6.0e-27 125.6 271 35.1
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.0e-27 125.6 142 49.3
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.3e-25 119.8 310 30.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.6e-24 117.5 134 49.3
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 3.6e-24 116.3 165 45.5
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 6.2e-24 115.5 272 36.4
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 4.0e-23 112.8 230 37.4
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 9.0e-23 111.7 223 37.2
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.0e-22 110.5 230 37.0
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.7e-21 107.5 213 37.6
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.1e-20 104.8 239 32.2
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.1e-20 104.8 298 30.5
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 9.3e-20 101.7 198 35.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 6.0e-19 99.0 220 32.7
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 6.0e-19 99.0 289 32.2
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 6.0e-19 99.0 208 34.6
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 6.7e-18 95.5 280 31.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 9.6e-17 91.7 84 54.8
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 1.6e-16 90.9 224 33.5
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.1e-16 90.5 188 35.1
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 3.6e-16 89.7 128 45.3
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 9.9e-14 81.6 123 44.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 2.3e-10 70.5 174 32.2
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 6.7e-10 68.9 98 38.8
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.8e-08 63.5 215 28.8
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 6.9e-07 58.9 94 40.4
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 4.5e-06 56.2 60 55.0


User provided reference genes

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