Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BZJ16Q Arachis hypogaea HOM05D008490 ORTHO05D010725 1.4e-133 479.6 227 100.0
arahy.Tifrunner.gnm1.ann1.PAX1AS Arachis hypogaea HOM05D008490 ORTHO05D010725 2.0e-108 396.0 186 100.0
Lj5g0013341 Lotus japonicus HOM05D008490 ORTHO05D010725 3.9e-104 381.7 186 97.3
LjContig00439g0024223 Lotus japonicus HOM05D008490 ORTHO05D010725 3.9e-104 381.7 186 97.3
Lj5g0002635 Lotus japonicus HOM05D008490 ORTHO05D010725 3.0e-96 355.5 186 91.4
Psat4g185480 Pisum sativum HOM05D008490 ORTHO05D010725 3.2e-74 282.3 134 98.5
VMungo0329G0002 Vigna mungo HOM05D008490 ORTHO05D010725 1.2e-73 280.4 134 98.5
TPR.G7850 Trifolium pratense HOM05D008490 ORTHO05D010725 1.6e-73 280.0 134 97.8
Sed0016837 Sechium edule HOM05D008490 ORTHO05D010725 1.8e-72 276.6 134 97.0
ECA039G0024 Erigeron canadensis HOM05D008490 ORTHO05D010725 7.4e-71 271.2 131 97.7
Lsat_1_v5_gn_5_16680 Lactuca sativa HOM05D008490 ORTHO05D010725 1.6e-70 270.0 134 94.8
CSS0048923 Camellia sinensis var. sinensis HOM05D008490 ORTHO05D010725 2.1e-70 269.6 128 99.2
Sed0023681 Sechium edule HOM05D008490 ORTHO05D010725 1.0e-67 260.8 128 96.9
Sopen00g006810 Solanum pennellii HOM05D008490 ORTHO05D010725 1.4e-66 256.9 134 91.8
Actinidia34838 Actinidia chinensis HOM05D008490 ORTHO05D010725 3.5e-65 252.3 120 98.3
Sc14g0003240 Simmondsia chinensis HOM05D008490 ORTHO05D010725 6.1e-65 251.5 120 98.3
MBI05_g05344_MAGBIO Magnolia biondii HOM05D008490 ORTHO05D010725 1.8e-64 250.0 115 99.1
unitig_87.g27953 Utricularia gibba HOM05D008490 ORTHO05D010725 1.9e-63 246.5 120 96.7
Nitab4.5_0000172g1820 Nicotiana tabacum HOM05D008490 ORTHO05D010725 1.4e-56 223.8 168 69.6
PGSC0003DMG400004057 Solanum tuberosum HOM05D008490 ORTHO05D010725 5.0e-51 205.3 100 95.0
Sc25g0002270 Simmondsia chinensis HOM05D008490 ORTHO05D010725 9.4e-50 201.1 108 88.9
Sc11g0004340 Simmondsia chinensis HOM05D008490 ORTHO05D010725 6.3e-46 188.3 97 94.8
arahy.Tifrunner.gnm1.ann1.GRFW67 Arachis hypogaea HOM05D008490 ORTHO05D010725 7.0e-45 184.9 90 93.3
Peaxi162Scf00477g00823 Petunia axillaris HOM05D008490 ORTHO05D010725 1.1e-42 177.6 83 96.4
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.7e-38 163.7 82 90.2
Nitab4.5_0004632g0020 Nicotiana tabacum HOM05D008490 ORTHO05D010725 2.4e-37 159.8 132 60.6
MBI16_g26183_MAGBIO Magnolia biondii HOM05D001356 ORTHO05D008843 7.0e-37 158.3 73 98.6
CSS0002229 Camellia sinensis var. sinensis HOM05D008490 ORTHO05D010725 8.5e-35 151.4 128 63.3
Lsat_1_v5_gn_5_16200 Lactuca sativa HOM05D005210 ORTHO05D010286 2.3e-32 143.3 65 96.9
Nitab4.5_0006476g0030 Nicotiana tabacum HOM05D008490 ORTHO05D010725 5.2e-32 142.1 68 94.1
Peaxi162Scf00000g58015 Petunia axillaris HOM05D008490 ORTHO05D010725 2.7e-28 129.8 71 90.1
arahy.Tifrunner.gnm1.ann1.38FWT1 Arachis hypogaea HOM05D008490 ORTHO05D010725 3.2e-26 122.9 59 98.3
Hma1.2p1_0621F.1_g190810 Hydrangea macrophylla HOM05D008490 ORTHO05D010725 6.1e-25 118.6 57 98.2
MBI05_g40994_MAGBIO Magnolia biondii HOM05D008490 ORTHO05D010725 5.7e-23 112.1 52 100.0
Nitab4.5_0005831g0100 Nicotiana tabacum HOM05D008490 ORTHO05D010725 5.7e-23 112.1 56 85.7
Hma1.2p1_0435F.1_g152380 Hydrangea macrophylla HOM05D008490 ORTHO05D010725 8.3e-22 108.2 51 98.0
Peaxi162Scf00677g00334 Petunia axillaris HOM05D008490 ORTHO05D010725 3.1e-21 106.3 65 84.6
Nn2g14502 Nelumbo nucifera HOM05D008490 ORTHO05D010725 4.1e-21 105.9 46 97.8
Phvul.002G106400 Phaseolus vulgaris HOM05D008490 ORTHO05D010725 2.9e-19 99.8 49 85.7
SGA_v2.0_scaffold245G44789 Striga asiatica HOM05D008490 ORTHO05D010725 2.9e-19 99.8 50 88.0
CBR_g3174 Chara braunii HOM05D008490 ORTHO05D010725 9.2e-13 78.2 51 78.4
PGSC0003DMG400023070 Solanum tuberosum HOM05D008490 ORTHO05D010725 1.2e-12 77.8 37 91.9
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 2.7e-12 76.6 97 43.3
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 5.0e-11 72.4 96 45.8
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 6.6e-11 72.0 93 44.1
Nitab4.5_0000127g0060 Nicotiana tabacum HOM05D008490 ORTHO05D010725 3.3e-10 69.7 37 81.1
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 7.3e-10 68.6 88 42.0
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 9.5e-10 68.2 93 41.9
Medtr3g463160 Medicago truncatula HOM05D021415 ORTHO05D010725 1.2e-07 61.2 31 87.1
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 1.5e-07 60.8 88 45.5
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 7.5e-07 58.5 85 45.9


User provided reference genes

Program Settings