Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BYJ2AF Arachis hypogaea HOM05D000045 ORTHO05D007522 2.6e-135 485.3 237 100.0
arahy.Tifrunner.gnm1.ann1.G6Y5VA Arachis hypogaea HOM05D000045 ORTHO05D000067 2.4e-24 116.7 69 73.9
TPR.G2699 Trifolium pratense HOM05D000045 ORTHO05D000067 6.0e-15 85.5 86 43.0
TPR.G37658 Trifolium pratense HOM05D000045 ORTHO05D000067 7.8e-15 85.1 65 52.3
arahy.Tifrunner.gnm1.ann1.Z9H0PS Arachis hypogaea HOM05D000045 ORTHO05D000067 6.6e-14 82.0 67 50.7
arahy.Tifrunner.gnm1.ann1.8SNE72 Arachis hypogaea HOM05D000045 ORTHO05D007522 2.5e-13 80.1 69 46.4
Lj6g0007124 Lotus japonicus HOM05D000045 ORTHO05D000067 3.3e-13 79.7 75 44.0
Lj4g0021877 Lotus japonicus HOM05D000045 ORTHO05D000067 1.6e-12 77.4 73 45.2
TPR.G29715 Trifolium pratense HOM05D000045 ORTHO05D007522 1.6e-12 77.4 62 46.8
TPR.G9983 Trifolium pratense HOM05D000045 ORTHO05D007522 2.1e-12 77.0 70 45.7
TPR.G27166 Trifolium pratense HOM05D000045 ORTHO05D007522 4.8e-12 75.9 103 35.9
Glyma.04G193200 Glycine max HOM05D000045 ORTHO05D000067 1.8e-11 73.9 81 38.3
arahy.Tifrunner.gnm1.ann1.U80MXJ Arachis hypogaea HOM05D000045 ORTHO05D000067 3.1e-11 73.2 61 50.8
Glyma.06G229800 Glycine max HOM05D000045 ORTHO05D007522 3.1e-11 73.2 65 41.5
Glyma.13G024651 Glycine max HOM05D000045 ORTHO05D000067 3.1e-11 73.2 65 41.5
arahy.Tifrunner.gnm1.ann1.52VG2X Arachis hypogaea HOM05D000045 ORTHO05D000067 4.0e-11 72.8 74 40.5
TPR.G17716 Trifolium pratense HOM05D062224 ORTHO05D015703 5.3e-11 72.4 103 35.0
TPR.G9519 Trifolium pratense HOM05D000045 ORTHO05D000067 5.3e-11 72.4 67 44.8
Atru.chr3.1745 Acer truncatum HOM05D000045 ORTHO05D000067 9.0e-11 71.6 108 36.1
Atru.chr3.3230 Acer truncatum HOM05D000045 ORTHO05D003357 1.2e-10 71.2 80 38.8
Lj1g0004807 Lotus japonicus HOM05D000045 ORTHO05D000067 2.0e-10 70.5 85 37.6
Glyma.13G000666 Glycine max HOM05D000045 ORTHO05D000067 2.6e-10 70.1 65 40.0
Glyma.18G179400 Glycine max HOM05D000045 ORTHO05D000067 2.6e-10 70.1 65 40.0
Lj2g0009070 Lotus japonicus HOM05D000045 ORTHO05D000067 2.6e-10 70.1 64 40.6
Atru.chr13.1929 Acer truncatum HOM05D000045 ORTHO05D000067 4.4e-10 69.3 108 36.1
Lj1g0005830 Lotus japonicus HOM05D000045 ORTHO05D003357 4.4e-10 69.3 69 37.7
Lj3g0023952 Lotus japonicus HOM05D000045 ORTHO05D003357 4.4e-10 69.3 69 37.7
Lj4g0003455 Lotus japonicus HOM05D000045 ORTHO05D003357 4.4e-10 69.3 69 37.7
Lj6g0018942 Lotus japonicus HOM05D000045 ORTHO05D000067 4.4e-10 69.3 69 37.7
LjContig00126g0012758 Lotus japonicus HOM05D000045 ORTHO05D000067 4.4e-10 69.3 69 37.7
TPR.G13712 Trifolium pratense HOM05D000123 ORTHO05D000064 4.4e-10 69.3 56 46.4
arahy.Tifrunner.gnm1.ann1.RPVA7B Arachis hypogaea HOM05D000045 ORTHO05D000067 7.6e-10 68.6 84 38.1
arahy.Tifrunner.gnm1.ann1.YPLZ25 Arachis hypogaea HOM05D000045 ORTHO05D000067 7.6e-10 68.6 84 38.1
Ciclev10003988m.g Citrus clementina HOM05D000045 ORTHO05D000067 7.6e-10 68.6 64 40.6
Glyma.10G121700 Glycine max HOM05D000045 ORTHO05D000067 9.9e-10 68.2 65 36.9
CANSAT01G1937 Cannabis sativa HOM05D000045 ORTHO05D000067 1.7e-09 67.4 67 40.3
Lj1g0001785 Lotus japonicus HOM05D000045 ORTHO05D007788 2.9e-09 66.6 68 39.7
Lj4g0015383 Lotus japonicus HOM05D000045 ORTHO05D000067 2.9e-09 66.6 68 39.7
Ciclev10003951m.g Citrus clementina HOM05D000045 ORTHO05D000067 3.8e-09 66.2 64 39.1
Lj5g0014284 Lotus japonicus HOM05D000045 ORTHO05D000067 1.1e-08 64.7 68 38.2
arahy.Tifrunner.gnm1.ann1.09H02D Arachis hypogaea HOM05D000045 ORTHO05D007522 1.9e-08 63.9 84 36.9
arahy.Tifrunner.gnm1.ann1.40DIQU Arachis hypogaea HOM05D000045 ORTHO05D003357 1.9e-08 63.9 142 29.6
Atru.chr11.656 Acer truncatum HOM05D000045 ORTHO05D000067 2.4e-08 63.5 51 49.0
Medtr6g022070 Medicago truncatula HOM05D068119 ORTHO05D000067 2.4e-08 63.5 61 45.9
PSO478G2933 Papaver somniferum HOM05D000045 ORTHO05D000067 5.4e-08 62.4 79 34.2
TPR.G28587 Trifolium pratense HOM05D000045 ORTHO05D003357 5.4e-08 62.4 71 35.2
Nn2g15037 Nelumbo nucifera HOM05D000045 ORTHO05D000067 7.1e-08 62.0 62 41.9
Nn7g36277 Nelumbo nucifera HOM05D000045 ORTHO05D000067 7.1e-08 62.0 64 39.1
Atru.chr4.298 Acer truncatum HOM05D000045 ORTHO05D000067 9.3e-08 61.6 107 29.9
arahy.Tifrunner.gnm1.ann1.09CHBQ Arachis hypogaea HOM05D000045 ORTHO05D000067 9.3e-08 61.6 59 42.4
CANSAT01G1326 Cannabis sativa HOM05D000045 ORTHO05D003357 9.3e-08 61.6 64 40.6
CANSAT35G1196 Cannabis sativa HOM05D000045 ORTHO05D000067 9.3e-08 61.6 64 40.6
CANSAT56G0096 Cannabis sativa HOM05D000045 ORTHO05D003357 9.3e-08 61.6 64 40.6
CANSAT64G0051 Cannabis sativa HOM05D000045 ORTHO05D003357 9.3e-08 61.6 70 35.7
Rhsim04G0114900 Rhododendron simsii HOM05D000045 ORTHO05D000067 9.3e-08 61.6 64 31.2
Rhsim04G0115100 Rhododendron simsii HOM05D000045 ORTHO05D000067 9.3e-08 61.6 64 31.2
Atru.chr4.215 Acer truncatum HOM05D000045 ORTHO05D003357 1.2e-07 61.2 64 39.1
CANSAT80G1193 Cannabis sativa HOM05D000045 ORTHO05D003357 1.2e-07 61.2 65 38.5
AUR62036571 Chenopodium quinoa HOM05D000045 ORTHO05D000067 1.2e-07 61.2 65 41.5
TPR.G39336 Trifolium pratense HOM05D000045 ORTHO05D007522 1.2e-07 61.2 51 52.9
TPR.G7191 Trifolium pratense HOM05D000045 ORTHO05D007522 1.2e-07 61.2 51 51.0
AUR62037552 Chenopodium quinoa HOM05D000045 ORTHO05D000067 1.6e-07 60.8 65 40.0
Nn7g36279 Nelumbo nucifera HOM05D000045 ORTHO05D000067 1.6e-07 60.8 64 39.1
PSO063G0978 Papaver somniferum HOM05D000045 ORTHO05D000067 1.6e-07 60.8 79 32.9
PSO153G0002 Papaver somniferum HOM05D000045 ORTHO05D000067 2.1e-07 60.5 68 42.6
CANSAT21G1115 Cannabis sativa HOM05D000045 ORTHO05D000067 2.7e-07 60.1 65 36.9
CANSAT35G0973 Cannabis sativa HOM05D000045 ORTHO05D000067 2.7e-07 60.1 65 36.9
PSO541G3683 Papaver somniferum HOM05D000045 ORTHO05D000067 2.7e-07 60.1 64 40.6
Rhsim03G0160300 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.7e-07 60.1 64 37.5
Lj5g0017601 Lotus japonicus HOM05D000045 ORTHO05D003357 3.5e-07 59.7 61 36.1
Rhsim02G0102200 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.6e-07 59.3 64 29.7
Rhsim11G0186200 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.6e-07 59.3 64 29.7
Atru.chr13.2639 Acer truncatum HOM05D000045 ORTHO05D000067 6.0e-07 58.9 64 39.1
Atru.chr4.254 Acer truncatum HOM05D000045 ORTHO05D003357 6.0e-07 58.9 64 39.1
CANSAT25G3753 Cannabis sativa HOM05D000045 ORTHO05D000067 6.0e-07 58.9 65 36.9
CANSAT54G0188 Cannabis sativa HOM05D000045 ORTHO05D000067 6.0e-07 58.9 65 36.9
CANSAT80G1400 Cannabis sativa HOM05D000045 ORTHO05D000067 6.0e-07 58.9 65 36.9
PSO063G3008 Papaver somniferum HOM05D000045 ORTHO05D000067 6.0e-07 58.9 67 34.3
Rhsim04G0161500 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.0e-07 58.9 64 35.9
Aqoxy7G01432 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 7.9e-07 58.5 60 43.3
CSS0010009 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.9e-07 58.5 64 32.8
CSS0031250 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.9e-07 58.5 64 32.8
CSS0018417 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.0e-06 58.2 64 32.8
CSS0048636 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.0e-06 58.2 64 32.8
CANSAT21G0088 Cannabis sativa HOM05D000045 ORTHO05D003357 1.0e-06 58.2 65 36.9
CANSAT25G0535 Cannabis sativa HOM05D000045 ORTHO05D000067 1.0e-06 58.2 65 36.9
ECA240G4011 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-06 58.2 64 31.2
Peaxi162Scf00151g00410 Petunia axillaris HOM05D000045 ORTHO05D002701 1.0e-06 58.2 68 33.8
Peaxi162Scf01373g00003 Petunia axillaris HOM05D000045 ORTHO05D002701 1.0e-06 58.2 68 33.8
Peaxi162Scf03947g00009 Petunia axillaris HOM05D000045 ORTHO05D002701 1.0e-06 58.2 68 33.8
TPR.G14690 Trifolium pratense HOM05D000045 ORTHO05D003357 1.0e-06 58.2 108 30.6
Aqoxy2G02826 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 1.3e-06 57.8 60 41.7
Duzib114G0119 Durio zibethinus HOM05D000045 ORTHO05D000067 1.3e-06 57.8 61 37.7
Duzib114G0589 Durio zibethinus HOM05D000045 ORTHO05D000067 1.3e-06 57.8 61 37.7
Hma1.2p1_1324F.1_g275680 Hydrangea macrophylla HOM05D000045 ORTHO05D001346 1.3e-06 57.8 64 37.5
PSO478G3462 Papaver somniferum HOM05D000045 ORTHO05D000067 1.3e-06 57.8 64 37.5
CSS0028932 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.7e-06 57.4 64 32.8
CiPaw.01G139200 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.7e-06 57.4 64 37.5
Peaxi162Scf00856g00315 Petunia axillaris HOM05D000045 ORTHO05D002701 1.7e-06 57.4 67 34.3
Rhsim01G0020000 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.7e-06 57.4 63 38.1
Rhsim02G0142300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.7e-06 57.4 64 29.7
TPR.G7522 Trifolium pratense HOM05D000045 ORTHO05D007522 1.7e-06 57.4 55 43.6
TAR371G0903 Trochodendron aralioides HOM05D000045 ORTHO05D000067 1.7e-06 57.4 67 32.8
CANSAT11G1175 Cannabis sativa HOM05D000045 ORTHO05D000067 2.3e-06 57.0 63 36.5
AUR62037256 Chenopodium quinoa HOM05D000045 ORTHO05D000067 2.3e-06 57.0 58 43.1
FvH4_3g23921 Fragaria vesca HOM05D000045 ORTHO05D019420 2.3e-06 57.0 90 35.6
PSO170G5863 Papaver somniferum HOM05D000045 ORTHO05D000067 2.3e-06 57.0 79 30.4
Prupe.8G014900 Prunus persica HOM05D000045 ORTHO05D000067 2.3e-06 57.0 65 33.8
RhsimUnG0161100 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.3e-06 57.0 64 34.4
RcHm_v2.0_Chr6g0246161 Rosa chinensis HOM05D000045 ORTHO05D011574 2.3e-06 57.0 65 35.4
Atru.chr12.1212 Acer truncatum HOM05D000045 ORTHO05D000067 3.0e-06 56.6 64 35.9
CANSAT11G0345 Cannabis sativa HOM05D000045 ORTHO05D000067 3.0e-06 56.6 65 35.4
CANSAT56G0751 Cannabis sativa HOM05D000045 ORTHO05D000067 3.0e-06 56.6 65 35.4
CANSAT78G0460 Cannabis sativa HOM05D000045 ORTHO05D000067 3.0e-06 56.6 65 35.4
MELO3C007004.2 Cucumis melo HOM05D000045 ORTHO05D000067 3.0e-06 56.6 62 38.7
PSO675G4441 Papaver somniferum HOM05D000045 ORTHO05D000067 3.0e-06 56.6 64 39.1
Prupe.2G091000 Prunus persica HOM05D000045 ORTHO05D000067 3.0e-06 56.6 61 36.1
Prupe.4G246500 Prunus persica HOM05D000045 ORTHO05D000067 3.0e-06 56.6 61 36.1
Prupe.5G036100 Prunus persica HOM05D000045 ORTHO05D000067 3.0e-06 56.6 61 36.1
TPR.G27877 Trifolium pratense HOM05D000045 ORTHO05D007522 3.0e-06 56.6 38 57.9
COL.COLO4_37508 Corchorus olitorius HOM05D000045 ORTHO05D003357 3.9e-06 56.2 62 37.1
FvH4_7g31230 Fragaria vesca HOM05D000045 ORTHO05D000067 3.9e-06 56.2 61 32.8
Nn1g01224 Nelumbo nucifera HOM05D000045 ORTHO05D000067 3.9e-06 56.2 61 36.1
Peaxi162Scf01954g00002 Petunia axillaris HOM05D000045 ORTHO05D002701 3.9e-06 56.2 84 29.8
CSS0039400 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D003357 5.1e-06 55.8 56 35.7
Lj3g0002255 Lotus japonicus HOM05D005194 ORTHO05D003357 5.1e-06 55.8 54 38.9
RcHm_v2.0_Chr3g0476211 Rosa chinensis HOM05D000045 ORTHO05D000067 5.1e-06 55.8 52 38.5
Sed0012242 Sechium edule HOM05D000045 ORTHO05D000067 5.1e-06 55.8 62 38.7
CiPaw.05G005200 Carya illinoinensis HOM05D000045 ORTHO05D000067 6.6e-06 55.5 64 34.4
COL.COLO4_19282 Corchorus olitorius HOM05D000045 ORTHO05D000067 6.6e-06 55.5 54 40.7
PSO541G3849 Papaver somniferum HOM05D000045 ORTHO05D000067 6.6e-06 55.5 64 34.4
PSO675G3853 Papaver somniferum HOM05D000045 ORTHO05D000067 6.6e-06 55.5 64 34.4
Peaxi162Scf01337g00019 Petunia axillaris HOM05D000045 ORTHO05D002701 6.6e-06 55.5 68 32.4
Prupe.1G194600 Prunus persica HOM05D000045 ORTHO05D000067 6.6e-06 55.5 60 40.0
THA.LOC104811148 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 6.6e-06 55.5 79 35.4
TPR.G16489 Trifolium pratense HOM05D000590 ORTHO05D006658 6.6e-06 55.5 64 34.4
COL.COLO4_07421 Corchorus olitorius HOM05D000045 ORTHO05D000067 8.7e-06 55.1 81 30.9
CsaV3_6G053050 Cucumis sativus L. HOM05D000045 ORTHO05D000067 8.7e-06 55.1 62 37.1
FvH4_2g07931 Fragaria vesca HOM05D000045 ORTHO05D000067 8.7e-06 55.1 63 34.9
Nitab4.5_0003719g0040 Nicotiana tabacum HOM05D000045 ORTHO05D001346 8.7e-06 55.1 88 34.1
PSO732G0186 Papaver somniferum HOM05D000045 ORTHO05D000067 8.7e-06 55.1 75 29.3
Rhsim05G0159900 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.7e-06 55.1 64 35.9
HPP92_028554 Vanilla planifolia HOM05D000045 ORTHO05D000067 8.7e-06 55.1 67 38.8


User provided reference genes

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