Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.0e-114 416.8 209 100.0
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.0e-111 405.2 209 97.1
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.2e-109 399.1 209 96.2
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 9.1e-84 313.9 207 79.7
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 4.2e-81 305.1 209 75.6
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.6e-80 303.1 209 74.2
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.6e-80 302.0 209 73.2
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 4.7e-80 301.6 209 75.6
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 4.7e-80 301.6 209 72.7
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.2e-78 297.0 209 71.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 4.4e-78 295.0 209 71.8
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 5.9e-75 284.6 198 73.7
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.5e-73 280.0 206 69.4
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.8e-72 275.8 210 67.6
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.0e-71 273.9 210 68.6
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.4e-71 273.5 206 68.0
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 5.2e-71 271.6 208 66.8
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 3.4e-70 268.9 203 69.5
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 7.5e-70 267.7 206 67.0
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.7e-69 266.5 206 66.0
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 8.3e-69 264.2 207 66.2
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 8.3e-69 264.2 206 65.5
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.1e-68 263.8 206 66.5
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.4e-68 263.5 210 65.2
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 2.4e-68 262.7 206 65.5
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 2.4e-68 262.7 206 64.1
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 9.2e-68 260.8 208 65.4
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.6e-67 260.0 207 63.8
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 2.0e-67 259.6 207 64.7
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 2.0e-67 259.6 206 64.1
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.7e-67 259.2 209 64.6
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 6.0e-67 258.1 200 68.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 7.8e-67 257.7 207 64.7
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.0e-66 257.3 211 64.5
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.0e-66 257.3 206 64.6
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.3e-66 256.9 207 64.3
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 2.3e-66 256.1 207 64.3
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 3.0e-66 255.8 206 64.1
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 6.6e-66 254.6 208 64.4
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.9e-65 253.1 200 67.0
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 3.3e-65 252.3 207 61.8
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 5.6e-65 251.5 200 66.5
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 7.3e-65 251.1 206 63.1
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 7.3e-65 251.1 207 61.8
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 9.5e-65 250.8 207 62.3
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 2.1e-64 249.6 212 62.3
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.8e-64 249.2 207 60.9
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.2e-64 248.1 211 60.7
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.1e-63 247.3 206 60.7
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 1.4e-63 246.9 211 59.7
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.8e-63 246.5 206 61.7
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 5.2e-63 245.0 206 62.1
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.9e-63 244.2 206 59.7
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 3.4e-62 242.3 210 59.0
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.4e-62 241.9 211 58.8
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.8e-62 241.5 206 61.2
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 7.5e-62 241.1 206 62.1
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 7.5e-62 241.1 206 62.1
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 9.8e-62 240.7 208 59.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.3e-61 240.4 207 61.8
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.7e-61 240.0 220 60.5
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.2e-61 239.6 206 59.2
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.9e-61 239.2 210 60.0
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.4e-60 236.9 198 64.1
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 3.2e-60 235.7 220 60.5
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 9.2e-60 234.2 209 57.9
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 3.5e-59 232.3 207 58.5
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 3.5e-59 232.3 206 60.2
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 4.6e-59 231.9 207 61.4
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 6.0e-59 231.5 207 58.9
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.0e-59 231.5 194 61.3
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 6.0e-59 231.5 206 60.7
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.3e-58 230.3 197 59.9
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 3.0e-58 229.2 203 60.6
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.0e-58 229.2 207 60.9
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 8.6e-58 227.6 206 58.3
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.9e-57 226.5 207 56.5
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 3.3e-57 225.7 200 58.0
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.3e-57 225.7 197 58.9
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 4.3e-57 225.3 206 60.7
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 9.5e-57 224.2 185 63.2
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.2e-56 223.8 210 57.6
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 3.6e-56 222.2 199 56.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 6.2e-56 221.5 195 60.0
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.4e-55 220.3 207 57.5
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 2.3e-55 219.5 205 56.6
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 3.1e-55 219.2 206 56.3
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 8.9e-55 217.6 199 57.3
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.2e-54 217.2 199 57.3
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.0e-54 216.5 170 65.3
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.8e-54 214.9 185 60.5
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 7.5e-54 214.5 206 57.3
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.3e-53 213.8 200 57.0
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.4e-52 210.3 206 54.9
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.2e-52 209.1 187 57.8
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 3.2e-52 209.1 206 55.8
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 7.1e-52 208.0 209 54.5
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.1e-51 206.5 206 53.4
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.3e-50 203.8 206 52.9
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 5.1e-50 201.8 206 51.9
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 5.1e-50 201.8 207 54.6
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 5.1e-50 201.8 301 42.9
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.9e-49 199.9 201 53.2
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 3.3e-49 199.1 205 52.7
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 3.3e-49 199.1 206 51.9
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 4.3e-49 198.7 207 52.2
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 4.3e-49 198.7 259 45.9
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.4e-47 193.0 206 53.4
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 5.2e-47 191.8 206 50.0
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 5.2e-47 191.8 204 51.0
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 6.8e-47 191.4 200 53.5
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.2e-46 190.7 206 50.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.7e-45 186.8 206 49.0
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.7e-45 186.8 206 49.0
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.8e-45 185.7 206 48.5
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 4.9e-45 185.3 206 48.5
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 8.4e-45 184.5 204 50.5
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.9e-44 183.3 206 51.9
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.1e-43 179.9 206 50.0
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.7e-42 174.5 199 50.3
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.8e-40 168.7 192 50.5
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 8.1e-40 167.9 184 52.2
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 9.0e-39 164.5 128 62.5
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 1.2e-38 164.1 183 48.6
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 2.0e-38 163.3 165 53.3
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 2.2e-37 159.8 197 48.7
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.4e-36 157.1 176 48.3
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 5.4e-36 155.2 184 50.5
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.1e-32 141.4 195 45.6
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.5e-30 137.1 108 66.7
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.3e-29 134.0 126 59.5
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.2e-27 127.5 151 42.4
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 7.9e-27 124.8 129 52.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.1e-25 120.9 128 46.1
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.6e-24 117.1 108 61.1
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.1e-24 114.8 100 54.0
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 8.1e-24 114.8 161 41.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.4e-23 114.0 104 54.8
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.9e-23 111.7 101 53.5
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 6.9e-23 111.7 111 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 5.8e-22 108.6 148 43.9
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 5.8e-22 108.6 143 47.6
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.1e-20 104.4 129 47.3
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.4e-20 104.0 114 50.0
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 5.1e-18 95.5 124 43.5
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.9e-17 93.6 124 43.5
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 2.8e-16 89.7 93 54.8
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.2e-14 84.3 112 42.9
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 5.8e-14 82.0 126 38.1
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.3e-13 80.9 157 35.0
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.2e-11 74.3 74 58.1
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.8e-10 70.5 64 62.5
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 1.8e-10 70.5 45 73.3
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.9e-09 67.0 74 55.4
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 9.7e-09 64.7 56 60.7
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 2.2e-08 63.5 71 53.5
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 1.1e-07 61.2 75 52.0
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 5.9e-06 55.5 39 64.1


User provided reference genes

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