Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 0.0e+00 1146.0 658 100.0
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 0.0e+00 1115.9 664 95.2
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.6e-158 563.9 668 54.8
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 3.6e-150 536.2 671 53.2
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.2e-143 513.1 669 51.1
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 6.1e-142 508.8 618 53.1
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.9e-135 487.3 718 48.3
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.2e-132 478.0 678 49.7
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 8.3e-131 471.9 653 49.2
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 9.1e-130 468.4 698 50.0
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.6e-126 457.6 697 48.1
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.0e-121 440.7 675 47.3
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 8.6e-112 408.7 607 47.4
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.5e-95 354.8 641 42.3
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.6e-94 351.3 627 44.0
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.1e-94 349.0 669 41.9
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 3.1e-93 347.1 730 38.8
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.8e-93 345.9 678 40.7
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.5e-92 344.7 620 43.2
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 3.4e-92 343.6 685 40.1
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.3e-91 341.7 592 43.4
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 4.9e-91 339.7 572 42.0
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.4e-90 338.2 577 43.3
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 2.4e-90 337.4 667 39.1
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.2e-90 337.0 572 43.2
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 9.2e-90 335.5 682 39.7
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.6e-89 334.7 718 39.8
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.6e-89 333.2 613 42.1
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 6.0e-89 332.8 647 39.1
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.0e-88 332.0 676 38.8
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.0e-88 330.5 715 40.3
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.9e-88 330.1 680 38.1
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-87 328.6 670 39.6
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.3e-87 327.0 713 37.4
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 3.3e-87 327.0 607 39.4
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 5.6e-87 326.2 613 42.3
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.8e-86 323.9 672 38.7
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.6e-86 323.6 610 41.3
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.1e-85 322.0 603 41.3
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.4e-85 320.9 638 40.4
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.1e-85 320.5 667 40.0
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.2e-85 319.7 602 40.2
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 5.2e-85 319.7 569 42.5
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.5e-84 318.2 665 37.4
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 3.8e-83 313.5 719 38.9
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 3.2e-82 310.5 605 41.0
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.2e-82 310.5 666 38.6
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.6e-81 308.1 689 36.6
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 2.1e-81 307.8 655 37.7
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 2.7e-81 307.4 614 39.9
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 6.0e-81 306.2 601 40.9
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 7.8e-81 305.8 581 38.9
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.3e-80 305.1 665 38.5
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.7e-80 304.7 659 39.0
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 2.3e-80 304.3 662 37.0
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.3e-80 304.3 633 38.4
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 3.0e-80 303.9 656 37.0
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 2.5e-79 300.8 724 36.2
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 3.3e-79 300.4 366 52.5
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 3.3e-79 300.4 656 35.8
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 9.6e-79 298.9 670 38.8
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.3e-78 298.5 699 37.2
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.1e-78 297.7 362 52.5
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.1e-78 297.7 575 41.6
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.8e-78 297.4 663 38.0
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.1e-77 295.4 605 39.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.0e-77 293.5 704 36.8
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 5.3e-77 293.1 671 38.6
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 9.0e-77 292.4 616 37.7
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.2e-76 292.0 663 36.8
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.5e-76 291.6 607 39.5
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.6e-76 290.8 688 34.3
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 5.8e-76 289.7 270 62.2
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 5.8e-76 289.7 608 38.7
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 2.2e-75 287.7 611 38.1
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 8.4e-75 285.8 684 34.9
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.4e-74 285.0 599 38.7
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.2e-74 283.5 612 39.2
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 7.1e-74 282.7 607 39.4
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 9.3e-74 282.3 605 37.7
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.2e-73 282.0 718 34.4
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.2e-73 282.0 399 47.4
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.6e-73 281.6 658 36.0
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 6.0e-73 279.6 658 35.6
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 7.9e-73 279.3 662 35.8
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 7.9e-73 279.3 621 38.6
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.3e-72 277.7 661 36.6
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 6.7e-72 276.2 608 38.3
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.9e-71 274.6 575 38.4
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.3e-70 271.9 301 56.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.4e-69 268.5 663 35.3
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.4e-69 268.5 582 36.1
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 2.4e-69 267.7 595 37.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.9e-69 266.2 311 55.3
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.6e-68 264.2 660 35.8
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 2.6e-68 264.2 573 36.5
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.5e-68 263.5 625 35.4
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 5.8e-68 263.1 627 35.1
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 7.1e-66 256.1 542 38.6
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 9.3e-66 255.8 609 35.3
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.6e-65 255.0 642 34.3
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 6.0e-65 253.1 661 33.6
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 6.0e-65 253.1 610 36.4
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.0e-64 252.3 665 33.8
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.0e-64 252.3 720 33.5
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.3e-64 251.1 661 34.3
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.9e-64 250.4 613 34.7
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 2.5e-63 247.7 371 46.6
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 4.3e-63 246.9 650 35.1
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.6e-63 246.5 527 37.2
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 2.8e-62 244.2 680 33.4
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 3.7e-62 243.8 683 34.3
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 8.1e-62 242.7 660 33.6
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 8.1e-62 242.7 672 33.5
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 8.1e-62 242.7 600 33.5
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 4.5e-60 236.9 661 33.9
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.0e-59 235.7 658 32.7
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 1.3e-59 235.3 557 37.9
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 1.2e-57 228.8 507 37.9
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 7.9e-57 226.1 301 52.2
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 3.9e-56 223.8 310 47.1
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.1e-55 222.2 248 56.9
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.1e-55 222.2 248 56.9
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.9e-55 221.5 567 34.9
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 2.8e-54 217.6 634 32.6
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.8e-53 214.9 573 33.9
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 5.3e-53 213.4 577 32.9
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 4.5e-52 210.3 592 33.3
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 2.5e-50 204.5 557 35.9
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 3.2e-50 204.1 253 53.4
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 5.5e-50 203.4 253 53.0
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 3.6e-49 200.7 592 32.4
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 4.3e-47 193.7 358 41.1
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 9.7e-47 192.6 259 48.3
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 5.9e-44 183.3 452 34.7
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 7.7e-44 183.0 585 30.4
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 7.7e-44 183.0 448 32.8
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 2.9e-43 181.0 499 33.1
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.1e-41 174.9 615 29.9
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 2.7e-41 174.5 232 46.6
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.3e-40 171.4 572 30.1
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.1e-39 169.1 657 30.3
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.0e-35 156.0 240 41.7
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 2.5e-34 151.4 389 32.9
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 9.7e-31 139.4 190 46.8
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.7e-30 138.7 236 40.7
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.7e-30 138.7 286 36.4
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 7.0e-29 133.3 255 37.3
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 7.0e-29 133.3 591 26.9
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.0e-27 129.4 213 45.1
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 5.2e-24 117.1 222 40.1
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 9.7e-23 112.8 121 59.5
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.1e-21 109.4 187 40.6
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.2e-20 105.9 137 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 5.0e-19 100.5 514 24.7
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.9e-18 98.6 79 67.1
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 9.4e-18 96.3 88 58.0
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.6e-17 95.5 238 36.1
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 3.6e-17 94.4 265 34.7
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 5.7e-15 87.0 59 69.5
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.7e-14 84.3 179 34.6
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.4e-13 81.6 76 68.4
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 4.1e-13 80.9 58 65.5
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 2.7e-12 78.2 147 42.2
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.5e-12 77.4 71 50.7
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 8.6e-11 73.2 76 47.4
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 2.5e-10 71.6 76 46.1
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 5.5e-10 70.5 75 42.7
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 7.2e-10 70.1 50 58.0
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 1.2e-09 69.3 50 56.0
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 1.2e-09 69.3 50 56.0
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 2.1e-09 68.6 50 58.0
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.7e-09 67.4 85 47.1
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 6.1e-09 67.0 55 50.9
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 6.1e-09 67.0 55 50.9
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.0e-08 64.7 98 44.9
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 5.2e-08 63.9 75 42.7
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 1.2e-07 62.8 257 24.5
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 2.0e-07 62.0 70 61.4
CARHR293790 Cardamine hirsuta HOM05D004018 ORTHO05D009829 3.4e-07 61.2 83 37.3
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.5e-07 60.1 92 42.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 6.3e-06 57.0 100 38.0


User provided reference genes

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