Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.6e-267 924.1 495 100.0
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 6.6e-266 920.2 495 99.6
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.5e-238 829.3 490 90.0
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 7.6e-238 827.0 490 89.8
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.8e-232 808.5 490 88.2
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 3.8e-229 798.1 492 87.4
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 8.4e-229 797.0 492 87.6
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 3.0e-226 788.5 473 89.4
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 3.9e-226 788.1 489 87.1
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.1e-225 786.6 491 87.2
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.8e-223 779.2 496 84.5
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.9e-220 769.2 492 85.0
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 3.1e-215 751.9 490 83.3
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.7e-211 738.8 490 81.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.7e-211 738.8 490 81.6
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.8e-207 726.1 501 79.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 4.1e-207 724.9 502 79.3
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 5.3e-207 724.5 503 79.9
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.6e-206 722.2 504 79.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.1e-204 716.8 496 79.0
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.6e-203 711.8 501 78.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 4.7e-203 711.4 501 78.0
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.0e-202 710.3 503 77.3
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.3e-202 709.1 501 77.8
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 5.2e-202 708.0 502 78.1
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.5e-201 706.4 476 82.4
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.0e-201 706.1 501 77.4
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 4.4e-201 704.9 499 76.2
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 5.7e-201 704.5 477 82.2
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.8e-199 699.5 500 76.8
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 3.5e-198 695.3 492 77.4
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.9e-198 694.5 504 76.8
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.7e-198 694.1 519 73.6
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.0e-197 693.7 504 76.6
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 8.5e-197 690.6 504 76.4
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.1e-196 690.3 497 76.5
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.5e-196 689.9 499 76.2
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.5e-196 689.1 492 77.4
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 7.2e-196 687.6 500 76.0
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-195 686.8 529 71.8
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.1e-195 686.0 500 74.8
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.6e-195 685.3 499 74.5
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 8.0e-195 684.1 472 79.2
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 8.8e-194 680.6 504 74.8
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.6e-193 679.1 504 74.6
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.7e-193 677.2 508 73.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 6.3e-192 674.5 504 75.0
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 9.1e-191 670.6 500 73.6
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.5e-190 668.7 523 74.0
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 5.0e-189 664.8 498 73.9
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 6.5e-189 664.5 500 71.8
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.9e-188 662.9 498 73.9
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.9e-188 662.9 489 76.1
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 4.2e-188 661.8 505 72.5
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.2e-188 661.8 499 73.7
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 9.4e-188 660.6 501 73.1
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.1e-187 659.4 493 73.8
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.4e-186 656.8 498 73.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.2e-185 653.7 493 72.8
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.2e-185 653.7 500 72.6
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.6e-185 652.5 501 72.7
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.4e-185 651.7 499 72.3
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 7.5e-185 651.0 498 72.5
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.2e-184 649.4 502 71.7
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 6.3e-184 647.9 502 72.9
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 9.1e-183 644.0 499 70.3
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.7e-182 642.5 503 70.6
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 4.5e-182 641.7 503 71.2
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 7.7e-182 641.0 503 71.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.3e-181 640.2 503 71.2
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 5.0e-181 638.3 511 70.3
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 8.6e-181 637.5 502 70.9
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.9e-180 636.3 502 70.1
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.9e-180 636.3 501 70.1
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 5.5e-180 634.8 503 70.0
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 5.5e-180 634.8 506 70.2
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.5e-180 634.0 471 75.2
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.2e-179 633.6 511 69.1
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 6.1e-179 631.3 501 72.9
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.0e-178 630.6 495 70.3
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 7.5e-177 624.4 500 69.6
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 6.3e-176 621.3 492 69.9
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 3.1e-175 619.0 500 68.8
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 4.5e-174 615.1 490 70.2
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.0e-173 614.0 500 68.4
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-173 613.6 502 68.5
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.9e-173 612.5 441 76.4
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 3.6e-171 605.5 494 68.4
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.8e-170 603.2 521 67.0
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 1.8e-170 603.2 510 67.1
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 3.0e-170 602.4 488 68.0
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.2e-170 601.7 495 66.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 6.8e-170 601.3 506 67.2
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 8.9e-170 600.9 501 68.3
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.4e-169 599.0 427 77.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 3.7e-168 595.5 500 65.2
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.2e-167 592.4 499 67.7
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 7.0e-167 591.3 504 65.5
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.3e-164 582.0 501 65.7
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 9.5e-164 580.9 500 66.6
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 2.6e-161 572.8 506 64.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.9e-159 566.6 442 71.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.1e-155 553.1 378 78.8
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.9e-152 542.7 356 82.0
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.4e-146 523.9 534 60.1
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.4e-145 519.2 484 63.2
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 5.4e-143 511.9 475 61.7
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 6.6e-141 505.0 477 60.6
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.3e-136 490.7 492 58.5
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 4.9e-136 488.8 491 60.5
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 4.8e-131 472.2 501 57.9
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.6e-123 447.2 391 67.5
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.8e-123 445.7 383 61.6
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 8.1e-123 444.9 403 61.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.1e-122 443.0 443 60.0
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.5e-121 440.7 375 69.3
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.0e-117 426.4 485 56.9
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-106 391.3 379 63.1
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.1e-106 391.3 379 63.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 4.5e-97 359.4 205 87.8
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 6.9e-90 335.5 253 76.7
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 9.1e-90 335.1 424 50.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 5.5e-87 325.9 356 52.5
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-85 321.6 218 78.9
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.3e-85 320.5 324 54.0
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.8e-82 310.8 446 45.5
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 7.7e-81 305.4 220 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 8.0e-78 295.4 414 43.2
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.8e-61 239.2 202 67.8
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.0e-60 237.7 270 55.6
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 8.3e-59 232.3 403 39.7
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.1e-54 217.6 394 36.8
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-51 207.6 164 69.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.0e-48 197.2 355 38.0
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-40 171.4 286 45.1
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.3e-40 171.0 132 70.5
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-40 170.2 95 87.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.2e-36 158.7 90 87.8
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.4e-35 152.9 105 67.6
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 6.2e-30 136.3 86 79.1
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 7.8e-25 119.4 185 44.3
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 4.0e-21 107.1 122 53.3
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 9.0e-21 105.9 144 50.0
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.9e-16 90.5 96 53.1
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 5.3e-13 80.1 66 69.7
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 6.9e-13 79.7 71 64.8
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.6e-09 68.6 60 58.3
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.6e-09 68.6 60 58.3
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.5e-07 62.0 60 53.3
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 4.3e-07 60.5 65 55.4
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 9.6e-07 59.3 188 31.9
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.8e-06 57.8 50 68.0


User provided reference genes

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