Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BPB7X4 Arachis hypogaea HOM05D001250 ORTHO05D000627 6.5e-103 377.5 203 100.0
arahy.Tifrunner.gnm1.ann1.JIT9FN Arachis hypogaea HOM05D001250 ORTHO05D000627 1.6e-61 240.0 241 62.7
arahy.Tifrunner.gnm1.ann1.1DC3U9 Arachis hypogaea HOM05D030090 ORTHO05D000627 1.1e-54 217.2 238 60.9
arahy.Tifrunner.gnm1.ann1.9RWZ5V Arachis hypogaea HOM05D001250 ORTHO05D000627 6.0e-48 194.9 167 71.3
Lalb_Chr05g0217241 Lupinus albus HOM05D001250 ORTHO05D000627 6.2e-37 158.3 204 47.1
Phvul.002G075900 Phaseolus vulgaris HOM05D001250 ORTHO05D000627 1.2e-32 144.1 195 47.2
Glyma.01G036600 Glycine max HOM05D001250 ORTHO05D000627 2.7e-32 142.9 204 47.5
arahy.Tifrunner.gnm1.ann1.JIQY4S Arachis hypogaea HOM05D030090 ORTHO05D000627 7.9e-32 141.4 137 62.0
Glyma.02G029400 Glycine max HOM05D001250 ORTHO05D000627 5.1e-31 138.7 196 44.4
VMungo1215G1309 Vigna mungo HOM05D001250 ORTHO05D000627 1.3e-29 134.0 201 44.8
Lj2g0019425 Lotus japonicus HOM05D001250 ORTHO05D000627 2.1e-29 133.3 200 45.0
Psat2g113200 Pisum sativum HOM05D001250 ORTHO05D000627 3.1e-28 129.4 210 44.8
TPR.G13949 Trifolium pratense HOM05D001250 ORTHO05D000627 3.5e-24 115.9 204 42.6
Haze_12128 Corylus avellana HOM05D001250 ORTHO05D000627 1.9e-22 110.2 187 39.6
COL.COLO4_37888 Corchorus olitorius HOM05D001250 ORTHO05D000627 8.2e-21 104.8 196 37.2
Manes.01G196000 Manihot esculenta HOM05D001250 ORTHO05D000627 8.2e-21 104.8 195 36.9
QL03p067113 Quercus lobata HOM05D001250 ORTHO05D000627 3.1e-20 102.8 209 37.8
Prupe.1G260700 Prunus persica HOM05D001250 ORTHO05D000627 6.9e-20 101.7 209 37.8
CiPaw.05G145900 Carya illinoinensis HOM05D001250 ORTHO05D000627 5.0e-18 95.5 193 37.3
arahy.Tifrunner.gnm1.ann1.I8NXM6 Arachis hypogaea HOM05D030090 ORTHO05D000627 1.9e-17 93.6 185 42.7
FAN12G1641 Fragaria x ananassa HOM05D001250 ORTHO05D000627 1.9e-17 93.6 219 37.4
CSS0019313 Camellia sinensis var. sinensis HOM05D001250 ORTHO05D000627 5.5e-17 92.0 177 38.4
MD16G1085400 Malus domestica HOM05D001250 ORTHO05D000627 5.5e-17 92.0 201 38.8
Cc11_g14160 Coffea canephora HOM05D001250 ORTHO05D000627 7.2e-17 91.7 184 38.0
Thecc.02G240900 Theobroma cacao HOM05D001250 ORTHO05D000627 7.2e-17 91.7 200 35.0
Sabra10G0028700 Salix brachista HOM05D001250 ORTHO05D000627 9.4e-17 91.3 187 37.4
CSS0048728 Camellia sinensis var. sinensis HOM05D001250 ORTHO05D000627 1.2e-16 90.9 178 39.3
FAN07G0319 Fragaria x ananassa HOM05D001250 ORTHO05D000627 1.2e-16 90.9 217 37.3
MD13G1086000 Malus domestica HOM05D001250 ORTHO05D000627 1.6e-16 90.5 196 38.3
FvH4_4g35130 Fragaria vesca HOM05D001250 ORTHO05D000627 2.1e-16 90.1 217 37.3
Gorai.005G186400 Gossypium raimondii HOM05D001250 ORTHO05D000627 2.1e-16 90.1 181 40.3
arahy.Tifrunner.gnm1.ann1.6W08F7 Arachis hypogaea HOM05D030090 ORTHO05D000627 2.7e-16 89.7 72 79.2
FAN17G0792 Fragaria x ananassa HOM05D001250 ORTHO05D000627 2.7e-16 89.7 214 36.9
CSS0002480 Camellia sinensis var. sinensis HOM05D001250 ORTHO05D000627 3.6e-16 89.4 175 38.3
Duzib251G0738 Durio zibethinus HOM05D001250 ORTHO05D000627 3.6e-16 89.4 196 36.2
TAR374G0543 Trochodendron aralioides HOM05D001250 ORTHO05D000627 3.6e-16 89.4 192 35.9
Ciclev10032466m.g Citrus clementina HOM05D001250 ORTHO05D000627 4.6e-16 89.0 193 36.8
Potri.010G036400 Populus trichocarpa HOM05D001250 ORTHO05D000627 4.6e-16 89.0 191 36.6
Sabra08G0146900 Salix brachista HOM05D001250 ORTHO05D000627 4.6e-16 89.0 178 38.2
TAR622G0054 Trochodendron aralioides HOM05D001250 ORTHO05D000627 4.6e-16 89.0 181 38.7
Manes.05G093100 Manihot esculenta HOM05D001250 ORTHO05D000627 6.1e-16 88.6 192 34.9
GSVIVG01020155001 Vitis vinifera HOM05D001250 ORTHO05D000627 7.9e-16 88.2 196 34.2
FAN22G0402 Fragaria x ananassa HOM05D001250 ORTHO05D000627 1.0e-15 87.8 218 35.8
Gohir.A03G143001 Gossypium hirsutum HOM05D001250 ORTHO05D000627 1.0e-15 87.8 181 40.3
Gohir.D02G166300 Gossypium hirsutum HOM05D001250 ORTHO05D000627 1.0e-15 87.8 181 39.8
Nitab4.5_0000257g0090 Nicotiana tabacum HOM05D001250 ORTHO05D000627 1.8e-15 87.0 197 34.5
Atru.chr11.1949 Acer truncatum HOM05D001250 ORTHO05D000627 3.0e-15 86.3 203 36.5
Duzib268G1574 Durio zibethinus HOM05D001250 ORTHO05D000627 5.1e-15 85.5 190 36.3
Peaxi162Scf01141g00013 Petunia axillaris HOM05D001250 ORTHO05D000627 2.5e-14 83.2 179 34.6
Dinv24910 Davidia involucrata HOM05D001250 ORTHO05D000627 4.3e-14 82.4 144 38.9
DCAR_026559 Daucus carota HOM05D001250 ORTHO05D000627 1.7e-13 80.5 198 38.9
Aqoxy3G03102 Aquilegia oxysepala HOM05D001250 ORTHO05D000627 2.8e-13 79.7 108 41.7
Lj3P1048T15 Lonicera japonica HOM05D001250 ORTHO05D000627 3.7e-13 79.3 102 46.1
Cpa.g.sc5.339 Carica papaya HOM05D001250 ORTHO05D000627 4.8e-13 79.0 211 30.3
Duzib248G0418 Durio zibethinus HOM05D001250 ORTHO05D000627 4.8e-13 79.0 148 37.2
Nn3g16998 Nelumbo nucifera HOM05D001250 ORTHO05D000627 4.8e-13 79.0 183 35.5
TWI36G0426 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 4.8e-13 79.0 102 47.1
Lj6P800T20 Lonicera japonica HOM05D001250 ORTHO05D000627 8.2e-13 78.2 106 43.4
Nn4g22907 Nelumbo nucifera HOM05D001250 ORTHO05D000627 1.1e-12 77.8 188 35.6
Rhsim12G0050500 Rhododendron simsii HOM05D001250 ORTHO05D000627 1.1e-12 77.8 201 35.3
Eucgr.B02564 Eucalyptus grandis HOM05D001250 ORTHO05D000627 1.4e-12 77.4 201 32.8
Nitab4.5_0010523g0020 Nicotiana tabacum HOM05D001250 ORTHO05D000627 1.8e-12 77.0 92 47.8
Oeu017600.1 Olea europaea HOM05D001250 ORTHO05D000627 2.4e-12 76.6 186 34.9
TAR629G2542 Trochodendron aralioides HOM05D001250 ORTHO05D000627 6.9e-12 75.1 132 37.9
Hma1.2p1_0160F.1_g070570 Hydrangea macrophylla HOM05D001250 ORTHO05D000627 1.2e-11 74.3 165 32.7
Sc11g0001400 Simmondsia chinensis HOM05D001250 ORTHO05D000627 1.2e-11 74.3 183 33.3
MSTRG.629 Avicennia marina HOM05D001250 ORTHO05D000627 1.5e-11 73.9 209 30.6
PSO591G0228 Papaver somniferum HOM05D001250 ORTHO05D000627 1.5e-11 73.9 183 35.0
PSO832G4141 Papaver somniferum HOM05D001250 ORTHO05D000627 2.6e-11 73.2 186 36.0
TWI75G0118 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 2.6e-11 73.2 113 41.6
TWI75G0561 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 2.6e-11 73.2 113 41.6
TWI75G1804 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 2.6e-11 73.2 113 41.6
Oeu026673.1 Olea europaea HOM05D001250 ORTHO05D000627 3.4e-11 72.8 94 42.6
Sopen05g002280 Solanum pennellii HOM05D001250 ORTHO05D000627 7.7e-11 71.6 194 35.1
PGSC0003DMG400015611 Solanum tuberosum HOM05D001250 ORTHO05D000627 7.7e-11 71.6 193 34.7
EL10Ac6g13753 Beta vulgaris HOM05D001250 ORTHO05D000627 1.0e-10 71.2 190 36.8
Rhsim12G0125200 Rhododendron simsii HOM05D001250 ORTHO05D000627 1.7e-10 70.5 98 41.8
MSTRG.2378 Avicennia marina HOM05D001250 ORTHO05D000627 2.2e-10 70.1 198 32.3
Nitab4.5_0006492g0010 Nicotiana tabacum HOM05D001250 ORTHO05D000627 2.2e-10 70.1 118 39.8
Migut.L01453 Erythranthe guttata HOM05D001250 ORTHO05D000627 3.8e-10 69.3 132 36.4
CiPaw.06G075500 Carya illinoinensis HOM05D001250 ORTHO05D000627 5.0e-10 68.9 198 32.8
Potri.008G193400 Populus trichocarpa HOM05D001250 ORTHO05D000627 6.5e-10 68.6 207 30.9
Solyc05g006310.3 Solanum lycopersicum HOM05D001250 ORTHO05D000627 6.5e-10 68.6 193 34.2
PGR102G3337 Punica granatum HOM05D001250 ORTHO05D000627 1.1e-09 67.8 182 33.5
TAR371G0161 Trochodendron aralioides HOM05D001250 ORTHO05D000627 1.1e-09 67.8 74 45.9
CAN.G159.18 Capsicum annuum HOM05D001250 ORTHO05D000627 1.4e-09 67.4 160 32.5
Hma1.2p1_1049F.1_g251840 Hydrangea macrophylla HOM05D001250 ORTHO05D000627 5.5e-09 65.5 197 32.0
ClCG05G024980 Citrullus lanatus HOM05D001250 ORTHO05D000627 9.4e-09 64.7 88 44.3
SGA_v2.0_scaffold63G21690 Striga asiatica HOM05D001250 ORTHO05D000627 2.1e-08 63.5 95 41.1
CsaV3_5G031910 Cucumis sativus L. HOM05D001250 ORTHO05D000627 2.7e-08 63.2 91 49.5
TWI18G0415 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 4.7e-08 62.4 107 42.1
DCAR_024520 Daucus carota HOM05D001250 ORTHO05D000627 6.1e-08 62.0 100 40.0
Gohir.A12G142100 Gossypium hirsutum HOM05D001250 ORTHO05D000627 7.9e-08 61.6 37 70.3
SGA_v2.0_scaffold166G38329 Striga asiatica HOM05D001250 ORTHO05D000627 7.9e-08 61.6 103 35.9
BcaC07g41820 Brassica carinata HOM05D001250 ORTHO05D000627 1.4e-07 60.8 54 55.6
A09p65040 Brassica napus HOM05D001250 ORTHO05D000627 1.4e-07 60.8 54 55.6
C08p48840 Brassica napus HOM05D001250 ORTHO05D000627 1.4e-07 60.8 54 55.6
BolC8t52421H Brassica oleracea HOM05D001250 ORTHO05D000627 1.4e-07 60.8 54 55.6
BraA09t41847Z Brassica rapa HOM05D001250 ORTHO05D000627 1.4e-07 60.8 54 55.6
Actinidia08184 Actinidia chinensis HOM05D001250 ORTHO05D000627 1.8e-07 60.5 126 38.9
Sp1g09110 Schrenkiella parvula HOM05D001250 ORTHO05D000627 1.8e-07 60.5 53 56.6
HPP92_017344 Vanilla planifolia HOM05D001250 ORTHO05D000627 2.3e-07 60.1 89 39.3
A08p33960 Brassica napus HOM05D001250 ORTHO05D000627 3.9e-07 59.3 138 33.3
BraA08t35309Z Brassica rapa HOM05D001250 ORTHO05D000627 3.9e-07 59.3 138 33.3
C08p13710 Brassica napus HOM05D001250 ORTHO05D000627 5.1e-07 58.9 158 31.6
BolC8t49007H Brassica oleracea HOM05D001250 ORTHO05D000627 5.1e-07 58.9 158 31.6
Gohir.D12G147000 Gossypium hirsutum HOM05D001250 ORTHO05D000627 5.1e-07 58.9 37 67.6
vmacro16289 Vaccinium macrocarpon HOM05D001250 ORTHO05D000627 5.1e-07 58.9 111 34.2
BcaC07g38604 Brassica carinata HOM05D001250 ORTHO05D000627 6.7e-07 58.5 125 35.2
Hma1.2p1_0002F.1_g002780 Hydrangea macrophylla HOM05D001250 ORTHO05D000627 6.7e-07 58.5 138 30.4
PSO478G5026 Papaver somniferum HOM05D001250 ORTHO05D000627 6.7e-07 58.5 93 39.8
CARHR010620 Cardamine hirsuta HOM05D001250 ORTHO05D000627 8.8e-07 58.2 52 55.8
MELO3C012028.2 Cucumis melo HOM05D001250 ORTHO05D000627 8.8e-07 58.2 179 35.8
DCAR_000151 Daucus carota HOM05D001250 ORTHO05D000627 8.8e-07 58.2 107 36.4
Thhalv10008773m.g Eutrema salsugineum HOM05D001250 ORTHO05D000627 8.8e-07 58.2 53 54.7
HPP92_017351 Vanilla planifolia HOM05D001250 ORTHO05D000627 8.8e-07 58.2 89 37.1
TAR365G0059 Trochodendron aralioides HOM05D001250 ORTHO05D000627 1.1e-06 57.8 66 48.5
Carub.0001s0991 Capsella rubella HOM05D001250 ORTHO05D000627 1.5e-06 57.4 52 55.8
Gorai.008G158200 Gossypium raimondii HOM05D001250 ORTHO05D000627 1.5e-06 57.4 37 64.9
THA.LOC104817063 Tarenaya hassleriana HOM05D001250 ORTHO05D000627 2.0e-06 57.0 149 35.6
MSTRG.7865 Avicennia marina HOM05D001250 ORTHO05D000627 2.6e-06 56.6 143 33.6
BcaB08g37354 Brassica carinata HOM05D001250 ORTHO05D000627 2.6e-06 56.6 53 56.6
Lsat_1_v5_gn_3_49580 Lactuca sativa HOM05D001250 ORTHO05D000627 2.6e-06 56.6 67 44.8
Lalb_Chr16g0382901 Lupinus albus HOM05D001250 ORTHO05D000627 2.6e-06 56.6 51 51.0
PSO210G5632 Papaver somniferum HOM05D001250 ORTHO05D000627 2.6e-06 56.6 51 47.1
PSO761G0358 Papaver somniferum HOM05D001250 ORTHO05D000627 2.6e-06 56.6 51 47.1
HanXRQChr12g0371271 Helianthus annuus HOM05D001250 ORTHO05D000627 3.3e-06 56.2 33 72.7
Peaxi162Scf01206g00012 Petunia axillaris HOM05D001250 ORTHO05D000627 3.3e-06 56.2 37 64.9
Ciclev10013754m.g Citrus clementina HOM05D001250 ORTHO05D000627 4.4e-06 55.8 51 51.0
Eucgr.B03372 Eucalyptus grandis HOM05D001250 ORTHO05D000627 4.4e-06 55.8 41 58.5
Lsat_1_v5_gn_8_160440 Lactuca sativa HOM05D001250 ORTHO05D000627 4.4e-06 55.8 93 40.9
Oeu012246.1 Olea europaea HOM05D001250 ORTHO05D000627 4.4e-06 55.8 203 30.5
Sed0027507 Sechium edule HOM05D001250 ORTHO05D000627 4.4e-06 55.8 104 35.6
Nitab4.5_0000034g0090 Nicotiana tabacum HOM05D001250 ORTHO05D000627 5.7e-06 55.5 58 50.0
HPP92_026429 Vanilla planifolia HOM05D001250 ORTHO05D000627 5.7e-06 55.5 90 37.8
QL10p012430 Quercus lobata HOM05D001250 ORTHO05D000627 7.4e-06 55.1 97 37.1
Ciclev10016426m.g Citrus clementina HOM05D001250 ORTHO05D000627 9.7e-06 54.7 46 52.2
MELO3C012263.2 Cucumis melo HOM05D001250 ORTHO05D000627 9.7e-06 54.7 54 46.3
CsaV3_5G034460 Cucumis sativus L. HOM05D001250 ORTHO05D000627 9.7e-06 54.7 54 46.3
Lj2g0023185 Lotus japonicus HOM05D001250 ORTHO05D000627 9.7e-06 54.7 47 53.2
Lalb_Chr05g0217761 Lupinus albus HOM05D001250 ORTHO05D000627 9.7e-06 54.7 51 49.0
Sed0002254 Sechium edule HOM05D001250 ORTHO05D000627 9.7e-06 54.7 54 46.3


User provided reference genes

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