Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 1.4e-217 759.6 457 100.0
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 3.9e-212 741.5 457 96.9
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 3.6e-141 505.8 451 63.0
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 8.0e-141 504.6 449 61.7
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.4e-140 503.8 382 69.6
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 1.1e-137 494.2 474 60.3
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 9.5e-134 481.1 384 67.2
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 4.9e-122 442.2 394 63.2
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 3.0e-119 433.0 389 61.7
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 7.3e-118 428.3 419 58.9
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 3.8e-98 362.8 376 55.9
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 4.6e-96 355.9 344 55.8
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.3e-95 354.4 356 55.1
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 1.7e-95 354.0 350 57.1
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 1.5e-94 350.9 352 57.7
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 1.6e-93 347.4 345 56.2
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.4e-92 344.4 394 53.6
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 5.2e-92 342.4 387 54.0
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 2.9e-90 336.7 347 53.9
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 2.4e-89 333.6 343 54.8
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 7.1e-89 332.0 353 54.1
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 1.6e-88 330.9 341 54.5
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 6.0e-88 328.9 349 54.4
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 3.9e-87 326.2 350 54.0
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 5.1e-87 325.9 350 52.9
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 4.3e-86 322.8 344 53.5
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.3e-85 321.2 351 54.7
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 2.1e-85 320.5 341 52.5
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 4.8e-85 319.3 349 52.7
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 1.1e-84 318.2 397 49.1
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 1.8e-84 317.4 373 49.9
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.4e-84 317.0 340 52.6
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 2.4e-84 317.0 340 53.2
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 3.1e-84 316.6 348 52.9
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 3.1e-84 316.6 352 52.0
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 4.0e-84 316.2 349 52.1
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 5.3e-84 315.8 346 53.8
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 5.3e-84 315.8 346 53.8
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 6.9e-84 315.5 337 52.2
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 5.8e-83 312.4 336 50.9
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 1.3e-82 311.2 350 53.4
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 1.7e-82 310.8 339 52.5
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 1.7e-82 310.8 339 52.5
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 2.2e-82 310.5 336 51.5
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 2.2e-82 310.5 352 51.1
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 3.8e-82 309.7 340 52.4
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 3.8e-82 309.7 336 51.2
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 4.9e-82 309.3 338 52.1
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 8.4e-82 308.5 337 51.9
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 1.4e-81 307.8 344 53.2
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 1.4e-81 307.8 339 51.3
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.9e-81 307.4 350 50.0
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 1.2e-80 304.7 337 52.2
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 2.1e-80 303.9 337 52.2
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 4.6e-80 302.8 337 52.2
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 1.8e-79 300.8 352 50.3
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 8.7e-79 298.5 365 49.0
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 8.7e-79 298.5 325 52.6
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 3.3e-78 296.6 347 51.3
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 6.9e-76 288.9 345 49.0
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 1.3e-74 284.6 342 48.8
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 2.2e-74 283.9 341 45.7
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 4.9e-74 282.7 345 49.3
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 1.1e-73 281.6 345 47.2
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 1.9e-73 280.8 340 50.3
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 2.4e-73 280.4 340 47.9
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 3.2e-73 280.0 356 46.1
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 5.5e-73 279.3 353 46.7
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 9.3e-73 278.5 343 46.4
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 9.3e-73 278.5 343 46.6
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 3.5e-72 276.6 361 45.7
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 3.5e-72 276.6 325 51.1
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 4.6e-72 276.2 349 48.7
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 2.3e-71 273.9 349 48.4
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 3.0e-71 273.5 247 57.5
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 3.9e-71 273.1 349 48.7
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 5.1e-71 272.7 341 49.6
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 1.5e-70 271.2 346 45.4
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 5.6e-70 269.2 273 52.4
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 1.3e-69 268.1 337 47.5
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 2.8e-69 266.9 450 41.8
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 1.0e-66 258.5 345 47.2
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 1.0e-66 258.5 345 44.6
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 2.2e-66 257.3 364 42.9
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 1.4e-65 254.6 338 44.7
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 9.3e-65 251.9 341 46.0
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 6.0e-64 249.2 349 45.6
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 1.2e-59 235.0 354 41.5
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 1.0e-58 231.9 344 42.2
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 2.1e-56 224.2 427 37.2
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 2.8e-53 213.8 347 37.2
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 4.2e-49 199.9 249 49.0
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 7.9e-48 195.7 337 41.5
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.0e-47 195.3 337 41.5
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 3.9e-47 193.4 275 41.8
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.5e-46 191.4 168 58.9
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.2e-45 187.6 161 59.6
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 4.8e-45 186.4 168 57.7
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 4.8e-45 186.4 354 35.0
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 6.1e-40 169.5 127 68.5
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 2.8e-37 160.6 341 33.1
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 3.1e-36 157.1 352 31.5
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 1.6e-24 118.2 86 70.9
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 1.5e-22 111.7 138 50.0
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.3e-21 108.6 176 39.8
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 6.3e-21 106.3 175 38.9
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 1.8e-20 104.8 284 32.0
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 4.5e-19 100.1 83 66.3
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 6.6e-18 96.3 313 27.8
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 1.9e-17 94.7 150 37.3
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 5.5e-17 93.2 79 55.7
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 8.9e-15 85.9 77 58.4
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 2.0e-14 84.7 205 34.6
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 1.1e-12 79.0 312 25.6
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.4e-12 77.8 154 35.7
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 5.9e-11 73.2 46 76.1
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 2.3e-10 71.2 51 68.6
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.0e-10 70.1 74 55.4
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 1.5e-09 68.6 75 52.0
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 2.0e-06 58.2 99 42.4


User provided reference genes

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