Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 5.8e-77 290.8 146 100.0
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 1.7e-52 209.5 144 77.1
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 6.0e-50 201.1 145 69.7
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 3.0e-49 198.7 145 69.7
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 3.0e-49 198.7 136 72.1
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 9.6e-48 193.7 140 67.9
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 1.6e-47 193.0 141 68.8
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 1.1e-46 190.3 141 68.1
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 1.4e-46 189.9 140 65.7
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 1.0e-44 183.7 142 65.5
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 7.9e-42 174.1 133 60.9
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 1.0e-41 173.7 112 73.2
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 1.0e-41 173.7 138 59.4
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 1.3e-41 173.3 133 60.9
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 1.3e-41 173.3 133 60.9
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 1.8e-41 172.9 131 62.6
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 1.8e-41 172.9 109 73.4
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 2.3e-41 172.6 133 59.4
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 2.3e-41 172.6 133 59.4
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 3.0e-41 172.2 136 60.3
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 6.7e-41 171.0 135 60.0
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 6.7e-41 171.0 111 73.0
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 1.1e-40 170.2 136 58.8
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 1.5e-40 169.9 112 67.9
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 2.5e-40 169.1 130 63.8
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 4.3e-40 168.3 110 70.0
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 4.3e-40 168.3 110 70.0
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 7.4e-40 167.5 138 58.0
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 7.4e-40 167.5 130 63.1
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 7.4e-40 167.5 137 59.1
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 7.4e-40 167.5 137 59.1
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 9.7e-40 167.2 138 59.4
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 9.7e-40 167.2 109 70.6
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 9.7e-40 167.2 109 70.6
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 1.6e-39 166.4 109 72.5
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 2.8e-39 165.6 111 68.5
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 3.7e-39 165.2 137 57.7
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 4.8e-39 164.9 108 71.3
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 4.8e-39 164.9 111 67.6
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 6.3e-39 164.5 137 56.9
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 8.2e-39 164.1 114 67.5
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 1.1e-38 163.7 109 69.7
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 1.1e-38 163.7 109 68.8
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 1.4e-38 163.3 141 58.2
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 1.4e-38 163.3 109 70.6
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 1.4e-38 163.3 129 62.0
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 1.8e-38 162.9 109 71.6
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 2.4e-38 162.5 109 72.5
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 2.4e-38 162.5 109 70.6
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 2.4e-38 162.5 109 68.8
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 4.1e-38 161.8 112 69.6
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 5.3e-38 161.4 129 60.5
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 9.0e-38 160.6 111 68.5
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 1.2e-37 160.2 121 63.6
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 1.5e-37 159.8 113 66.4
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 1.5e-37 159.8 113 66.4
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 1.5e-37 159.8 113 66.4
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.5e-37 159.8 109 67.9
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 2.0e-37 159.5 131 61.1
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 2.0e-37 159.5 110 70.9
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 2.6e-37 159.1 109 70.6
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 2.6e-37 159.1 109 68.8
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 4.5e-37 158.3 109 68.8
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 5.9e-37 157.9 110 69.1
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 5.9e-37 157.9 110 69.1
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 7.7e-37 157.5 127 60.6
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.0e-36 157.1 109 67.9
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 2.9e-36 155.6 114 66.7
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 2.9e-36 155.6 145 55.9
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 3.8e-36 155.2 109 66.1
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 3.8e-36 155.2 146 56.8
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 6.5e-36 154.5 140 53.6
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 8.5e-36 154.1 109 66.1
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.4e-35 153.3 109 62.4
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 1.9e-35 152.9 112 64.3
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 4.2e-35 151.8 109 63.3
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 2.1e-34 149.4 148 51.4
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 1.0e-33 147.1 110 62.7
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 1.4e-33 146.7 93 73.1
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.8e-33 146.4 135 57.0
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 5.1e-33 144.8 135 55.6
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 1.1e-32 143.7 109 63.3
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 1.1e-32 143.7 109 65.1
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 1.9e-32 142.9 149 53.7
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 1.9e-32 142.9 157 49.7
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 5.7e-32 141.4 164 48.8
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 1.0e-28 130.6 103 62.1
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 2.2e-28 129.4 87 71.3
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 8.5e-28 127.5 86 69.8
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 1.4e-27 126.7 109 56.9
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 2.5e-27 125.9 111 57.7
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 4.2e-27 125.2 126 55.6
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 5.5e-27 124.8 109 58.7
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 9.4e-27 124.0 109 57.8
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 6.1e-26 121.3 109 56.9
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 1.1e-24 117.1 111 48.6
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 2.0e-24 116.3 114 53.5
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 3.3e-24 115.5 87 63.2
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 4.4e-24 115.2 114 47.4
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.3e-23 113.6 137 45.3
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 8.2e-23 110.9 114 50.9
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 8.2e-23 110.9 109 49.5
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 2.4e-22 109.4 75 65.3
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 5.3e-22 108.2 94 56.4
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 1.4e-19 100.1 103 54.4
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 1.2e-18 97.1 63 73.0
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 2.7e-18 95.9 99 49.5
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 1.8e-17 93.2 65 70.8
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 4.4e-16 88.6 53 79.2
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 1.9e-11 73.2 48 70.8
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 1.9e-11 73.2 105 36.2
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 2.5e-11 72.8 48 66.7
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 2.7e-10 69.3 89 44.9
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 1.8e-09 66.6 49 61.2
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 3.7e-07 58.9 47 51.1
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 6.3e-07 58.2 81 42.0


User provided reference genes

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