Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BH5QN1 Arachis hypogaea HOM05D006802 ORTHO05D008507 1.1e-256 889.4 455 100.0
arahy.Tifrunner.gnm1.ann1.M4INHU Arachis hypogaea HOM05D006802 ORTHO05D008507 1.3e-196 689.9 484 78.7
Lalb_Chr02g0142571 Lupinus albus HOM05D006802 ORTHO05D008507 2.5e-134 483.0 380 67.4
Glyma.02G144900 Glycine max HOM05D006802 ORTHO05D008507 1.3e-122 444.1 375 67.2
VMungo0720G2797 Vigna mungo HOM05D006802 ORTHO05D008507 2.1e-117 426.8 375 64.8
Phvul.007G174300 Phaseolus vulgaris HOM05D006802 ORTHO05D008507 1.4e-116 424.1 378 64.8
TPR.G25699 Trifolium pratense HOM05D006802 ORTHO05D008507 8.9e-108 394.8 380 62.6
Medtr1g071470 Medicago truncatula HOM05D006802 ORTHO05D008507 3.4e-107 392.9 394 60.9
Lj5g0013924 Lotus japonicus HOM05D006802 ORTHO05D008507 2.2e-106 390.2 369 62.6
QL12p020415 Quercus lobata HOM05D006802 ORTHO05D008507 3.2e-105 386.3 377 56.8
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 7.0e-105 385.2 384 57.0
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 3.3e-102 376.3 380 55.0
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 4.0e-100 369.4 430 49.5
Ca_09735_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 8.9e-100 368.2 368 60.9
Psat6g059280 Pisum sativum HOM05D006802 ORTHO05D008507 4.9e-98 362.5 367 59.9
Duzib133G0133 Durio zibethinus HOM05D006802 ORTHO05D008507 3.2e-97 359.8 377 53.8
Manes.01G204700 Manihot esculenta HOM05D006802 ORTHO05D008507 7.0e-97 358.6 375 54.9
Atru.chr5.1503 Acer truncatum HOM05D006802 ORTHO05D008507 9.2e-97 358.2 385 53.2
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 3.5e-96 356.3 377 53.8
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 3.0e-95 353.2 377 51.7
Ciclev10023787m.g Citrus clementina HOM05D006802 ORTHO05D008507 3.0e-95 353.2 424 51.7
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 6.6e-95 352.1 381 52.0
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 2.1e-93 347.1 383 52.2
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 3.6e-93 346.3 375 51.7
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 1.4e-92 344.4 377 52.5
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 1.5e-91 340.9 369 50.7
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 1.5e-91 340.9 383 52.7
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 6.4e-90 335.5 374 50.3
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 6.4e-90 335.5 370 51.6
CsaV3_7G027850 Cucumis sativus L. HOM05D006802 ORTHO05D008507 8.3e-90 335.1 376 54.0
TWI75G0310 Tripterygium wilfordii HOM05D006802 ORTHO05D008507 1.9e-89 334.0 381 54.3
Sed0009701 Sechium edule HOM05D006802 ORTHO05D008507 9.2e-89 331.6 376 50.8
MD03G1259400 Malus domestica HOM05D006802 ORTHO05D008507 1.6e-88 330.9 373 51.5
AL5G46150 Arabidopsis lyrata HOM05D006802 ORTHO05D008507 2.7e-88 330.1 374 49.2
COL.COLO4_09049 Corchorus olitorius HOM05D006802 ORTHO05D008507 1.0e-87 328.2 378 49.7
Lj1A51G14 Lonicera japonica HOM05D006802 ORTHO05D008507 1.7e-87 327.4 375 51.7
MELO3C015801.2 Cucumis melo HOM05D006802 ORTHO05D008507 3.0e-87 326.6 376 53.2
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 1.5e-86 324.3 381 52.8
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 2.5e-86 323.6 381 50.7
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 4.3e-86 322.8 380 51.8
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 1.2e-85 321.2 371 48.0
Aa31LG10G17140 Aethionema arabicum HOM05D000738 ORTHO05D000675 2.1e-85 320.5 374 52.7
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 1.1e-84 318.2 378 50.8
CANSAT25G2646 Cannabis sativa HOM05D006802 ORTHO05D008507 1.4e-84 317.8 373 50.4
FAN15G2517 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.8e-84 317.4 372 50.8
FAN15G2655 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.8e-84 317.4 372 50.8
FAN24G3569 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.8e-84 317.4 375 53.3
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 1.8e-84 317.4 372 51.6
FvH4_2g23081 Fragaria vesca HOM05D006802 ORTHO05D008507 4.0e-84 316.2 375 52.8
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 8.9e-84 315.1 370 50.0
FAN20G1382 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.2e-83 314.7 372 51.6
Sc05g0001260 Simmondsia chinensis HOM05D006802 ORTHO05D008507 2.6e-83 313.5 377 51.2
EL10Ac5g10508 Beta vulgaris HOM05D006802 ORTHO05D008507 5.8e-83 312.4 381 48.0
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 9.9e-83 311.6 372 48.9
Ah.11g050290 Amaranthus hybridus HOM05D006802 ORTHO05D008507 2.9e-82 310.1 386 47.7
CARHR291660 Cardamine hirsuta HOM05D006802 ORTHO05D008507 2.9e-82 310.1 372 50.8
Hund02858 Selenicereus undatus HOM05D006802 ORTHO05D008507 2.9e-82 310.1 376 48.1
FAN27G2418 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.8e-82 309.7 372 51.6
Carub.0005s2995 Capsella rubella HOM05D006802 ORTHO05D008507 4.9e-82 309.3 368 47.6
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 4.9e-82 309.3 376 50.3
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 4.9e-82 309.3 379 47.2
PSO170G3117 Papaver somniferum HOM05D006802 ORTHO05D008507 1.0e-79 301.6 379 45.9
SalBow4G3164 Salvia bowleyana HOM05D006802 ORTHO05D008507 1.3e-79 301.2 371 50.9
AUR62011982 Chenopodium quinoa HOM05D006802 ORTHO05D008507 3.0e-79 300.1 381 50.1
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 3.9e-79 299.7 372 47.6
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 3.9e-79 299.7 370 47.0
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 6.6e-79 298.9 373 47.2
AUR62032294 Chenopodium quinoa HOM05D006802 ORTHO05D008507 1.1e-78 298.1 437 47.4
Oeu023625.1 Olea europaea HOM05D006802 ORTHO05D008507 2.5e-78 297.0 375 46.9
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 3.3e-78 296.6 393 45.0
Migut.D00338 Erythranthe guttata HOM05D006802 ORTHO05D008507 1.4e-76 291.2 369 50.4
Gohir.A12G003100 Gossypium hirsutum HOM05D006802 ORTHO05D008507 6.9e-76 288.9 430 42.6
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 4.2e-73 279.6 369 43.6
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 1.2e-72 278.1 316 49.7
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 2.1e-72 277.3 369 43.6
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 2.7e-72 276.9 374 43.9
unitig_8.g3726 Utricularia gibba HOM05D006802 ORTHO05D008507 4.6e-72 276.2 370 44.3
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 1.7e-71 274.2 374 43.6
SGA_v2.0_scaffold138G35303 Striga asiatica HOM05D006802 ORTHO05D008507 6.6e-71 272.3 369 48.8
AT3G63290 Arabidopsis thaliana HOM05D006802 ORTHO05D008507 8.7e-71 271.9 314 47.8
SalBow4G0867 Salvia bowleyana HOM05D006802 ORTHO05D008507 1.9e-70 270.8 311 53.4
ATR0665G117 Amborella trichopoda HOM05D006802 ORTHO05D008507 2.5e-70 270.4 373 46.4
MBI11_g04239_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 1.3e-69 268.1 416 40.1
Os10g0208500 Oryza sativa ssp. japonica HOM05D006802 ORTHO05D008507 4.2e-65 253.1 390 42.8
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 4.6e-64 249.6 291 48.1
FAN27G1711 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.8e-63 247.7 299 51.2
Zm00001eb202090 Zea mays HOM05D006802 ORTHO05D008507 3.0e-63 246.9 412 39.8
Gohir.D12G002800 Gossypium hirsutum HOM05D006802 ORTHO05D008507 3.9e-63 246.5 357 42.9
Actinidia21140 Actinidia chinensis HOM05D006802 ORTHO05D008507 1.5e-62 244.6 374 42.0
Hma1.2p1_1924F.1_g307700 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 3.7e-61 240.0 247 51.0
PGR044G0137 Punica granatum HOM05D006802 ORTHO05D008507 3.7e-61 240.0 386 40.9
PGR047G0003 Punica granatum HOM05D006802 ORTHO05D008507 3.7e-61 240.0 386 40.9
CiPaw.07G088100 Carya illinoinensis HOM05D006802 ORTHO05D008507 2.0e-59 234.2 374 39.6
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 1.8e-55 221.1 376 40.7
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 3.0e-55 220.3 366 40.4
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 1.6e-53 214.5 369 40.9
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 2.6e-51 207.2 370 39.2
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 1.0e-47 195.3 396 33.3
Mapoly0127s0046 Marchantia polymorpha HOM05D006802 ORTHO05D008507 5.1e-47 193.0 426 33.8
MBI11_g35086_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 2.5e-46 190.7 194 50.5
Pp3c22_5720 Physcomitrium patens HOM05D006802 ORTHO05D008507 4.8e-45 186.4 429 32.2
BcaB02g08069 Brassica carinata HOM05D006802 ORTHO05D008507 5.0e-42 176.4 262 40.8
SMO358G0716 Selaginella moellendorffii HOM05D006802 ORTHO05D008507 3.2e-41 173.7 368 35.9
Glyma.10G029100 Glycine max HOM05D006802 ORTHO05D008507 4.6e-40 169.9 185 61.1
MD11G1280000 Malus domestica HOM05D006802 ORTHO05D008507 1.7e-37 161.4 128 66.4
Dinv32894 Davidia involucrata HOM05D000738 ORTHO05D000675 4.1e-36 156.8 193 48.7
Pp3c22_5780 Physcomitrium patens HOM05D006802 ORTHO05D008507 2.0e-35 154.5 330 32.7
SEGI_17080 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 5.5e-33 146.4 380 31.1
SEGI_40565 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 1.6e-32 144.8 369 31.2
GSVIVG01001201001 Vitis vinifera HOM05D006802 ORTHO05D008507 2.1e-32 144.4 118 64.4
GSVIVG01001200001 Vitis vinifera HOM05D006802 ORTHO05D008507 5.5e-25 119.8 131 53.4
MBI11_g35085_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 5.3e-20 103.2 171 39.2
Actinidia24920 Actinidia chinensis HOM05D000738 ORTHO05D011926 4.8e-13 80.1 57 64.9
BcaB02g08068 Brassica carinata HOM05D006802 ORTHO05D008507 2.5e-09 67.8 46 69.6
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 8.0e-08 62.8 186 25.8
FAN27G1988 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.4e-07 62.0 43 65.1
CBR_g56394 Chara braunii HOM05D006802 ORTHO05D008507 1.8e-07 61.6 60 43.3
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 2.3e-07 61.2 287 25.1
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 2.3e-07 61.2 122 32.0
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 3.0e-07 60.8 199 27.1
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 3.0e-07 60.8 184 25.5
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 4.0e-07 60.5 185 26.5
Hma1.2p1_1968F.1_g309460 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 4.0e-07 60.5 185 26.5
AL9U10250 Arabidopsis lyrata HOM05D005850 ORTHO05D007405 6.8e-07 59.7 123 32.5
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 6.8e-07 59.7 144 29.2
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 6.8e-07 59.7 286 24.5
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 6.8e-07 59.7 129 32.6
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 1.2e-06 58.9 184 25.5
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 1.5e-06 58.5 202 26.2
Actinidia20338 Actinidia chinensis HOM05D005850 ORTHO05D007405 2.0e-06 58.2 244 24.6
Nn8g39265 Nelumbo nucifera HOM05D005850 ORTHO05D007405 2.0e-06 58.2 184 25.5
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 2.6e-06 57.8 124 32.3
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 2.6e-06 57.8 123 31.7
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 2.6e-06 57.8 184 24.5
GSVIVG01015433001 Vitis vinifera HOM05D005850 ORTHO05D007405 2.6e-06 57.8 149 28.9
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 3.4e-06 57.4 136 30.9
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 3.4e-06 57.4 199 27.1
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 4.4e-06 57.0 184 24.5
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 4.4e-06 57.0 129 32.6
ClCG11G002620 Citrullus lanatus HOM05D005850 ORTHO05D007405 5.7e-06 56.6 129 31.0
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 5.7e-06 56.6 167 28.1
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 7.5e-06 56.2 184 24.5
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 7.5e-06 56.2 129 29.5
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 9.8e-06 55.8 135 29.6
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 9.8e-06 55.8 130 31.5
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 9.8e-06 55.8 184 24.5
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 9.8e-06 55.8 129 31.0


User provided reference genes

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