Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 7.7e-138 493.8 250 100.0
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.0e-134 483.4 250 98.0
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.4e-78 297.0 249 66.3
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.8e-65 253.4 253 58.1
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 4.3e-64 248.8 249 55.8
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 7.1e-59 231.5 234 58.1
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.3e-55 220.7 214 60.3
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.1e-54 217.6 188 66.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.5e-40 170.6 207 51.7
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.5e-37 160.6 247 43.7
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.4e-35 154.1 213 46.0
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 6.1e-34 148.7 220 44.5
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.4e-33 147.5 200 46.0
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 3.9e-33 146.0 250 42.4
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 8.8e-33 144.8 220 44.1
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.2e-31 140.2 214 43.9
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.8e-31 139.0 199 45.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.8e-30 137.1 208 42.8
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.4e-30 136.7 199 46.2
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 5.3e-30 135.6 166 50.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 9.1e-30 134.8 208 44.2
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 9.1e-30 134.8 205 45.4
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 2.0e-29 133.7 211 41.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.5e-29 132.9 208 41.3
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 4.5e-29 132.5 208 41.8
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 7.7e-29 131.7 270 36.7
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 7.7e-29 131.7 208 41.3
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.2e-28 130.2 260 38.5
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.9e-28 129.8 255 40.4
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 6.5e-28 128.6 207 42.0
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 8.5e-28 128.3 212 40.1
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.9e-27 127.1 203 41.4
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.5e-27 126.7 204 41.2
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 2.5e-27 126.7 244 41.0
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 3.2e-27 126.3 214 39.3
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 4.2e-27 125.9 204 43.6
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.5e-27 125.6 214 39.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 5.5e-27 125.6 214 39.7
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 9.4e-27 124.8 213 38.0
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 9.4e-27 124.8 112 61.6
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 2.1e-26 123.6 196 40.8
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.1e-26 123.6 202 40.6
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 4.7e-26 122.5 207 40.1
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.4e-25 120.9 247 39.3
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.4e-25 120.9 213 38.0
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.8e-25 120.6 211 38.4
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.8e-25 120.6 212 39.6
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.3e-25 120.2 251 35.1
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.3e-25 120.2 206 38.8
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 5.2e-25 119.0 211 38.9
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 5.2e-25 119.0 238 35.7
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.7e-25 118.6 99 64.6
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.5e-24 117.5 206 38.8
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.5e-24 117.5 218 36.7
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.5e-24 117.5 210 37.6
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.6e-24 116.7 213 38.0
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.6e-24 116.7 252 34.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.3e-24 116.3 197 39.1
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 9.7e-24 114.8 205 36.1
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.3e-23 114.4 234 34.6
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.3e-23 114.4 234 34.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.7e-23 114.0 230 37.0
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.8e-23 113.2 230 37.0
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 3.7e-23 112.8 212 37.3
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 3.7e-23 112.8 215 36.7
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 4.8e-23 112.5 190 41.6
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 4.8e-23 112.5 212 38.7
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 6.3e-23 112.1 208 39.4
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 6.3e-23 112.1 210 35.2
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 6.3e-23 112.1 204 37.3
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.1e-22 111.3 260 34.6
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.1e-22 111.3 202 37.6
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.1e-22 111.3 212 37.7
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.4e-22 110.9 213 39.0
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.8e-22 110.5 172 42.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 2.4e-22 110.2 226 35.8
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.1e-22 109.8 170 44.1
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 4.1e-22 109.4 215 35.8
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 4.1e-22 109.4 215 35.8
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 7.0e-22 108.6 210 36.7
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 9.1e-22 108.2 208 36.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-21 107.8 195 36.9
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.2e-21 107.8 204 36.3
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.0e-21 107.1 192 38.5
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.0e-21 107.1 208 36.5
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 3.5e-21 106.3 154 44.2
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 5.9e-21 105.5 192 39.1
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.0e-20 104.8 210 36.2
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.0e-20 104.8 210 36.2
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 3.8e-20 102.8 177 42.4
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 5.0e-20 102.4 196 38.3
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 5.0e-20 102.4 199 36.2
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 6.5e-20 102.1 202 35.6
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 8.5e-20 101.7 207 35.7
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.1e-19 101.3 207 36.2
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 2.5e-19 100.1 197 36.5
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.2e-19 99.4 199 35.7
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 9.4e-19 98.2 204 34.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 9.4e-19 98.2 201 36.3
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.6e-18 97.4 185 37.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 4.7e-18 95.9 290 31.7
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 4.7e-18 95.9 155 38.1
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 6.1e-18 95.5 108 50.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.8e-17 94.0 208 33.7
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.8e-17 94.0 209 35.9
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.3e-17 93.6 206 33.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 3.0e-17 93.2 135 44.4
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 4.0e-17 92.8 252 33.7
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 4.0e-17 92.8 218 34.4
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 5.2e-17 92.4 120 47.5
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 5.7e-16 89.0 211 31.8
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 5.7e-16 89.0 211 31.8
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 9.8e-16 88.2 152 40.8
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 9.8e-16 88.2 217 34.1
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.3e-15 87.8 267 29.2
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.2e-15 87.0 215 33.5
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 3.7e-15 86.3 132 38.6
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.7e-15 86.3 257 30.7
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 4.8e-15 85.9 211 31.3
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.4e-14 84.3 206 31.6
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.6e-13 80.9 152 37.5
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 2.0e-13 80.5 218 30.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.5e-13 79.3 105 42.9
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.5e-13 79.3 306 26.8
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.3e-12 77.0 91 46.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.9e-11 73.9 197 31.0
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.9e-11 73.9 183 29.0
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 7.2e-11 72.0 215 29.8
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-10 71.2 321 25.5
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.4e-09 67.8 94 43.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.3e-09 67.0 90 41.1
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 6.8e-09 65.5 127 36.2
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.0e-08 63.9 85 47.1
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 7.5e-08 62.0 95 38.9
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 9.8e-08 61.6 70 48.6
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.2e-07 60.5 89 40.4
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.8e-06 57.4 197 26.9
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 3.1e-06 56.6 50 54.0
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 5.4e-06 55.8 92 39.1
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 7.0e-06 55.5 89 38.2
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 9.2e-06 55.1 89 38.2


User provided reference genes

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