Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 7.1e-53 210.3 104 100.0
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 1.0e-27 126.7 60 95.0
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 9.6e-26 120.2 60 85.0
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.1e-25 119.0 60 86.7
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 2.8e-25 118.6 60 88.3
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 2.8e-25 118.6 60 85.0
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 2.8e-25 118.6 60 85.0
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 2.8e-25 118.6 60 85.0
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 3.7e-25 118.2 60 86.7
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 4.8e-25 117.9 60 86.7
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 4.8e-25 117.9 60 86.7
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.2e-25 117.5 60 85.0
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 6.2e-25 117.5 58 89.7
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 6.2e-25 117.5 63 82.5
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 86.7
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 85.0
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 8.2e-25 117.1 59 88.1
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 86.7
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 86.7
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 86.7
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 86.7
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 8.2e-25 117.1 59 88.1
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 86.7
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 8.2e-25 117.1 59 86.4
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 86.7
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 8.2e-25 117.1 60 85.0
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.1e-24 116.7 60 85.0
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.1e-24 116.7 60 85.0
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.1e-24 116.7 59 88.1
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.1e-24 116.7 60 85.0
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 1.1e-24 116.7 60 85.0
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.1e-24 116.7 62 80.6
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 1.1e-24 116.7 60 85.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.4e-24 116.3 60 85.0
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.4e-24 116.3 60 85.0
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.8e-24 115.9 60 86.7
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.8e-24 115.9 60 85.0
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.8e-24 115.9 60 83.3
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.8e-24 115.9 58 87.9
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.8e-24 115.9 60 83.3
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.8e-24 115.9 59 86.4
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 1.8e-24 115.9 60 85.0
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 2.4e-24 115.5 60 85.0
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.4e-24 115.5 60 85.0
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 2.4e-24 115.5 60 83.3
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 2.4e-24 115.5 60 83.3
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 2.4e-24 115.5 59 84.7
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 2.4e-24 115.5 59 84.7
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.4e-24 115.5 60 86.7
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.4e-24 115.5 59 86.4
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 2.4e-24 115.5 57 87.7
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.4e-24 115.5 59 86.4
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 2.4e-24 115.5 60 83.3
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.1e-24 115.2 58 89.7
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 3.1e-24 115.2 60 85.0
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.1e-24 115.2 60 83.3
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 4.1e-24 114.8 60 85.0
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 4.1e-24 114.8 59 84.7
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 4.1e-24 114.8 60 83.3
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 4.1e-24 114.8 60 83.3
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 4.1e-24 114.8 60 83.3
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 4.1e-24 114.8 59 84.7
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 4.1e-24 114.8 59 84.7
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 83.3
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 5.3e-24 114.4 67 80.6
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 81.7
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 81.7
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 81.7
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 81.7
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 81.7
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 81.7
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 81.7
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 5.3e-24 114.4 59 84.7
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 83.3
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 5.3e-24 114.4 60 81.7
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 6.9e-24 114.0 60 81.7
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 81.7
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 80.0
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 83.3
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 80.0
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 80.0
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 80.0
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 80.0
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 80.0
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 9.0e-24 113.6 60 81.7
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.2e-23 113.2 60 83.3
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 1.2e-23 113.2 60 83.3
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-23 113.2 60 80.0
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-23 113.2 60 80.0
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-23 113.2 60 80.0
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 1.2e-23 113.2 60 80.0
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.5e-23 112.8 60 80.0
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.5e-23 112.8 60 85.0
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.5e-23 112.8 60 81.7
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-23 112.5 60 81.7
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-23 112.5 60 81.7
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-23 112.5 60 81.7
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-23 112.5 60 81.7
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.0e-23 112.5 60 81.7
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.0e-23 112.5 60 80.0
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.0e-23 112.5 60 80.0
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.6e-23 112.1 58 82.8
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.4e-23 111.7 58 82.8
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 3.4e-23 111.7 60 78.3
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.4e-23 111.7 55 87.3
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.5e-23 111.3 55 89.1
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 4.5e-23 111.3 60 80.0
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 4.5e-23 111.3 60 81.7
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 4.5e-23 111.3 60 78.3
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 5.8e-23 110.9 60 81.7
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 7.6e-23 110.5 60 78.3
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.0e-22 110.2 60 80.0
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.0e-22 110.2 58 82.8
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.0e-22 110.2 60 78.3
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.3e-22 109.8 60 76.7
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.7e-22 109.4 55 87.3
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.7e-22 109.4 55 87.3
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.7e-22 109.4 60 76.7
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 2.9e-22 108.6 60 80.0
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 2.9e-22 108.6 60 80.0
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.9e-22 108.6 57 82.5
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.9e-22 108.6 57 82.5
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.0e-22 107.8 55 83.6
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 5.0e-22 107.8 54 87.0
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 5.0e-22 107.8 60 76.7
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 8.4e-22 107.1 60 76.7
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.1e-21 106.7 60 78.3
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.1e-21 106.7 60 75.0
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 2.5e-21 105.5 55 83.6
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 5.5e-21 104.4 60 73.3
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 9.3e-21 103.6 55 80.0
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.1e-20 102.4 57 73.7
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 2.1e-20 102.4 57 73.7
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 6.1e-20 100.9 57 80.7
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 3.9e-19 98.2 59 66.1
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 2.5e-18 95.5 59 67.8
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 6.9e-16 87.4 43 88.4
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.0e-14 83.6 62 62.9
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 7.9e-12 73.9 55 52.7
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.8e-11 72.8 46 67.4
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.2e-09 65.9 34 82.4
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 4.1e-08 61.6 48 54.2
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.2e-07 60.1 58 50.0


User provided reference genes

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