Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 1.1e-167 593.2 297 100.0
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.2e-166 589.7 297 99.0
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 4.7e-126 454.9 298 77.9
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 3.1e-125 452.2 296 77.7
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 1.5e-119 433.3 292 76.0
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 1.9e-119 433.0 296 75.0
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 4.3e-119 431.8 296 74.0
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.6e-119 431.4 294 75.2
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 7.5e-116 421.0 291 75.3
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 2.7e-113 412.5 290 74.5
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 1.5e-111 406.8 294 72.8
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.9e-111 406.4 297 72.1
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 9.5e-111 404.1 302 71.2
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 2.8e-110 402.5 298 72.5
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 1.1e-109 400.6 298 70.8
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 3.1e-109 399.1 298 69.8
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 1.2e-108 397.1 302 69.2
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 1.5e-108 396.7 282 72.3
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.6e-108 396.0 297 69.7
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 3.4e-108 395.6 302 69.2
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 5.8e-108 394.8 305 68.5
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 5.8e-108 394.8 297 69.4
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 3.8e-107 392.1 300 69.3
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 8.4e-107 391.0 291 69.1
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 1.1e-106 390.6 296 70.3
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 4.2e-106 388.7 298 69.1
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 2.1e-105 386.3 295 69.5
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 2.1e-105 386.3 297 69.0
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 4.6e-105 385.2 302 66.9
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 6.0e-105 384.8 295 69.2
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 7.8e-105 384.4 296 69.9
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.0e-104 384.0 293 65.2
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 1.0e-104 384.0 299 69.6
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 1.3e-104 383.6 290 68.3
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 2.3e-104 382.9 291 68.4
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 3.9e-104 382.1 298 67.4
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 8.7e-104 380.9 278 70.5
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.5e-103 380.2 288 66.0
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 2.5e-103 379.4 289 68.2
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 3.3e-103 379.0 289 67.8
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.6e-102 375.6 304 66.4
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 2.4e-101 372.9 309 66.7
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 4.0e-101 372.1 300 66.7
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 5.3e-101 371.7 289 65.1
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 6.9e-101 371.3 292 66.4
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 9.0e-101 370.9 292 63.4
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 5.8e-100 368.2 266 71.4
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 1.3e-99 367.1 274 66.8
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 2.9e-99 365.9 295 66.8
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 4.9e-99 365.2 297 65.0
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 8.4e-99 364.4 283 65.4
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 8.4e-99 364.4 302 64.9
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.9e-98 363.2 324 63.0
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 1.9e-98 363.2 331 61.3
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 5.4e-98 361.7 285 64.2
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 5.4e-98 361.7 296 65.2
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 7.1e-98 361.3 324 62.7
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 7.1e-98 361.3 296 65.9
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 7.1e-98 361.3 286 63.6
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 9.3e-98 360.9 295 65.8
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 9.3e-98 360.9 311 63.7
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 2.1e-97 359.8 274 65.0
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 2.1e-97 359.8 282 67.7
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 4.6e-97 358.6 266 65.8
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 1.0e-96 357.5 295 65.1
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 1.3e-96 357.1 298 64.1
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 2.3e-96 356.3 298 63.8
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 3.0e-96 355.9 307 62.2
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 8.7e-96 354.4 298 63.4
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 1.1e-95 354.0 352 57.1
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 9.6e-95 350.9 300 64.3
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 1.1e-93 347.4 313 60.1
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.0e-92 343.2 332 59.3
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 2.6e-92 342.8 296 60.1
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 3.4e-92 342.4 297 62.6
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 5.8e-92 341.7 283 60.4
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 1.3e-91 340.5 283 61.5
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 1.3e-91 340.5 296 63.2
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 2.2e-91 339.7 302 61.9
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 2.2e-91 339.7 297 62.3
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 2.9e-91 339.3 291 64.3
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.1e-90 337.4 286 63.6
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 9.3e-90 334.3 310 59.0
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 9.3e-90 334.3 291 61.5
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 1.6e-89 333.6 304 60.9
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 3.3e-87 325.9 325 57.2
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 9.6e-87 324.3 269 63.6
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 3.8e-83 312.4 291 61.2
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 1.9e-82 310.1 300 58.3
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 4.6e-81 305.4 286 60.5
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.3e-80 303.9 286 60.1
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 6.7e-80 301.6 296 59.5
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 1.5e-79 300.4 304 55.9
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 1.3e-78 297.4 292 56.5
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 5.8e-76 288.5 227 63.9
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 1.3e-72 277.3 236 59.3
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 3.7e-70 269.2 295 49.8
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 2.4e-69 266.5 198 71.2
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 5.3e-69 265.4 190 68.4
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 3.4e-68 262.7 294 51.0
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 2.3e-64 250.0 179 69.3
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 1.2e-57 227.6 300 47.0
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 6.1e-57 225.3 177 66.1
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 1.4e-56 224.2 289 48.4
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 2.2e-54 216.9 141 73.0
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 3.1e-53 213.0 198 55.6
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 3.2e-50 203.0 160 66.2
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 6.7e-48 195.3 129 76.7
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 1.5e-47 194.1 218 53.7
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 2.2e-46 190.3 182 60.4
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 5.3e-45 185.7 296 37.8
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 1.2e-44 184.5 154 65.6
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 7.7e-44 181.8 287 42.9
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.9e-42 177.2 155 61.9
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 3.2e-42 176.4 303 38.6
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.2e-41 174.5 270 38.1
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 4.8e-38 162.5 141 62.4
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 3.2e-34 149.8 105 70.5
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 9.4e-34 148.3 137 63.5
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 2.1e-33 147.1 143 58.0
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 5.2e-32 142.5 105 66.7
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 1.1e-29 134.8 89 69.7
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 6.1e-25 119.0 80 71.2
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 8.0e-25 118.6 256 36.7
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 1.4e-21 107.8 117 56.4
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 1.7e-19 100.9 98 60.2
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 3.9e-19 99.8 77 63.6
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 4.3e-18 96.3 101 59.4
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 1.6e-17 94.4 110 48.2
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 4.7e-17 92.8 273 30.0
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 4.9e-14 82.8 100 48.0
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 1.6e-09 67.8 88 50.0
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 5.2e-08 62.8 242 26.0


User provided reference genes

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