Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.5e-41 172.6 94 100.0
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.2e-35 152.9 77 96.1
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 6.5e-21 104.0 58 75.9
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.4e-20 102.8 58 75.9
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.5e-20 102.1 58 74.1
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 3.2e-20 101.7 63 71.4
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 4.2e-20 101.3 59 69.5
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 4.2e-20 101.3 55 76.4
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 4.2e-20 101.3 58 74.1
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 7.1e-20 100.5 58 72.4
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 7.1e-20 100.5 58 70.7
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 7.1e-20 100.5 58 70.7
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 7.1e-20 100.5 69 66.7
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 7.1e-20 100.5 63 68.3
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 9.3e-20 100.1 58 72.4
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.2e-19 99.8 63 68.3
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 1.2e-19 99.8 63 69.8
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.6e-19 99.4 58 72.4
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.1e-19 99.0 58 72.4
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.1e-19 99.0 58 72.4
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.1e-19 99.0 58 72.4
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.1e-19 99.0 79 58.2
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 2.1e-19 99.0 63 66.7
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 2.1e-19 99.0 54 75.9
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 3.5e-19 98.2 51 78.4
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 3.5e-19 98.2 55 74.5
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.5e-19 98.2 69 60.9
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 4.6e-19 97.8 55 74.5
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 4.6e-19 97.8 63 66.7
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 6.0e-19 97.4 63 65.1
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 6.0e-19 97.4 63 66.7
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 6.0e-19 97.4 57 70.2
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 6.0e-19 97.4 57 70.2
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 6.0e-19 97.4 47 83.0
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 6.0e-19 97.4 63 66.7
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 7.9e-19 97.1 47 80.9
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 7.9e-19 97.1 51 80.4
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 7.9e-19 97.1 58 70.7
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 7.9e-19 97.1 75 61.3
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 7.9e-19 97.1 62 67.7
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.0e-18 96.7 46 82.6
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 1.0e-18 96.7 51 78.4
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.3e-18 96.3 56 71.4
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.3e-18 96.3 63 65.1
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.3e-18 96.3 58 70.7
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.3e-18 96.3 51 82.4
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.3e-18 96.3 51 82.4
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.3e-18 96.3 66 63.6
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.8e-18 95.9 56 67.9
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.8e-18 95.9 70 60.0
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.8e-18 95.9 55 72.7
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.8e-18 95.9 62 66.1
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.3e-18 95.5 57 66.7
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 2.3e-18 95.5 47 80.9
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.3e-18 95.5 69 66.7
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 2.3e-18 95.5 65 64.6
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 2.3e-18 95.5 60 65.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.0e-18 95.1 62 62.9
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 3.0e-18 95.1 79 58.2
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 3.0e-18 95.1 70 60.0
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.0e-18 95.1 63 63.5
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 3.0e-18 95.1 65 69.2
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.0e-18 95.1 55 72.7
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 3.9e-18 94.7 56 71.4
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.9e-18 94.7 53 71.7
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 3.9e-18 94.7 57 66.7
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 3.9e-18 94.7 58 69.0
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 3.9e-18 94.7 58 69.0
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.9e-18 94.7 58 69.0
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 3.9e-18 94.7 52 71.2
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 3.9e-18 94.7 82 59.8
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 3.9e-18 94.7 82 59.8
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 3.9e-18 94.7 58 69.0
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 5.1e-18 94.4 57 66.7
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 5.1e-18 94.4 57 66.7
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 5.1e-18 94.4 63 66.7
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 5.1e-18 94.4 65 64.6
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 5.1e-18 94.4 58 67.2
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 5.1e-18 94.4 58 67.2
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 5.1e-18 94.4 64 65.6
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 6.7e-18 94.0 70 58.6
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.7e-18 94.0 47 76.6
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 6.7e-18 94.0 47 80.9
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 6.7e-18 94.0 63 66.7
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 6.7e-18 94.0 57 68.4
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 6.7e-18 94.0 62 62.9
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 6.7e-18 94.0 56 75.0
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 8.7e-18 93.6 75 57.3
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 8.7e-18 93.6 64 64.1
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 8.7e-18 93.6 59 62.7
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 8.7e-18 93.6 59 62.7
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.1e-17 93.2 70 60.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.1e-17 93.2 57 66.7
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.1e-17 93.2 57 66.7
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.1e-17 93.2 63 61.9
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-17 93.2 47 78.7
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-17 93.2 47 78.7
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.1e-17 93.2 47 80.9
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.5e-17 92.8 63 66.7
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.5e-17 92.8 64 64.1
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.5e-17 92.8 63 66.7
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 1.5e-17 92.8 56 71.4
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.5e-17 92.8 52 71.2
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.9e-17 92.4 58 65.5
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.5e-17 92.0 62 66.1
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.5e-17 92.0 57 66.7
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.5e-17 92.0 64 65.6
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.5e-17 92.0 47 78.7
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 2.5e-17 92.0 47 78.7
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.5e-17 92.0 47 78.7
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.3e-17 91.7 53 73.6
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 3.3e-17 91.7 62 66.1
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 3.3e-17 91.7 70 57.1
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 3.3e-17 91.7 70 57.1
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 3.3e-17 91.7 70 57.1
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 3.3e-17 91.7 72 59.7
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 3.3e-17 91.7 47 74.5
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 4.3e-17 91.3 57 68.4
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 4.3e-17 91.3 69 60.9
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 5.7e-17 90.9 70 57.1
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 5.7e-17 90.9 70 57.1
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 5.7e-17 90.9 52 71.2
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 5.7e-17 90.9 76 56.6
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 5.7e-17 90.9 76 56.6
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 5.7e-17 90.9 76 57.9
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 7.4e-17 90.5 63 58.7
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 7.4e-17 90.5 64 62.5
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 7.4e-17 90.5 47 76.6
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 9.7e-17 90.1 62 66.1
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 9.7e-17 90.1 58 65.5
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 9.7e-17 90.1 62 62.9
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.6e-16 89.4 82 52.4
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 2.2e-16 89.0 56 66.1
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 2.2e-16 89.0 64 60.9
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.8e-16 88.6 80 55.0
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 2.8e-16 88.6 47 72.3
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 2.8e-16 88.6 63 60.3
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 3.7e-16 88.2 58 72.4
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 4.8e-16 87.8 65 58.5
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 8.2e-16 87.0 65 60.0
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.4e-15 86.3 63 63.5
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.8e-15 85.9 51 62.7
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.4e-15 85.5 42 81.0
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 5.3e-15 84.3 47 72.3
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.3e-13 79.7 69 55.1
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.7e-13 79.3 42 71.4
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.9e-13 78.6 56 60.7
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.9e-13 78.6 56 60.7
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 3.8e-13 78.2 64 57.8
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 8.5e-13 77.0 43 74.4
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.0e-09 65.9 60 50.0
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 9.7e-09 63.5 46 58.7
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 8.2e-08 60.5 53 52.8
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 2.0e-06 55.8 34 70.6


User provided reference genes

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