Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-105 386.7 201 100.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 6.5e-79 297.7 220 75.9
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.5e-78 296.6 220 75.9
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-77 293.5 220 75.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 8.3e-66 254.2 217 63.1
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 1.6e-64 250.0 229 59.4
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.7e-63 246.5 226 61.1
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 3.8e-63 245.4 223 62.8
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.1e-62 243.8 224 62.1
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 5.5e-62 241.5 224 62.1
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 3.6e-61 238.8 229 59.8
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.0e-60 235.7 227 58.6
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 5.2e-60 235.0 223 59.6
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.5e-59 233.4 227 58.6
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 4.4e-59 231.9 225 57.8
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 9.8e-59 230.7 224 60.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.6e-56 223.4 226 59.3
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 2.0e-56 223.0 229 57.2
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 2.5e-54 216.1 222 54.5
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 9.5e-54 214.2 221 54.3
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.1e-53 213.0 218 54.6
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.1e-53 213.0 221 53.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 2.1e-53 213.0 227 56.4
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 6.1e-53 211.5 218 54.1
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 6.1e-53 211.5 224 56.7
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 8.0e-53 211.1 227 55.1
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 8.0e-53 211.1 224 56.2
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 8.0e-53 211.1 224 56.2
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.0e-52 210.7 223 53.4
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.4e-52 210.3 226 54.9
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.4e-52 210.3 220 53.2
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.8e-52 209.9 226 56.2
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.3e-52 209.5 223 52.9
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.3e-52 209.5 222 53.6
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 3.1e-52 209.1 225 51.6
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.1e-52 209.1 226 54.0
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.0e-52 208.8 226 55.3
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 6.8e-52 208.0 224 52.2
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 2.6e-51 206.1 223 52.0
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.6e-51 206.1 225 53.3
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 9.8e-51 204.1 224 53.6
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 9.8e-51 204.1 221 53.8
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 9.8e-51 204.1 221 55.2
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.7e-50 203.4 230 51.3
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.9e-50 202.6 223 54.3
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.9e-50 202.6 230 50.9
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 3.7e-50 202.2 229 52.4
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 8.3e-50 201.1 216 53.2
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.4e-49 200.3 224 53.1
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.9e-49 199.9 220 52.3
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.9e-49 199.9 225 52.9
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 5.4e-49 198.4 224 51.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.2e-48 197.2 223 50.7
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.0e-48 196.4 233 47.6
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.5e-48 195.7 226 51.3
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.6e-48 195.3 226 51.3
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 6.0e-48 194.9 220 51.8
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.3e-47 193.7 222 52.3
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.7e-47 193.4 228 52.6
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.3e-47 193.0 219 51.6
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.0e-47 192.6 222 51.8
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 3.0e-47 192.6 231 49.4
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 3.9e-47 192.2 221 50.7
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 5.0e-47 191.8 221 52.0
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 8.6e-47 191.0 233 48.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.9e-46 189.9 221 50.2
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.9e-46 189.9 221 49.8
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.9e-46 189.9 220 50.5
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.5e-46 189.5 221 49.8
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.5e-46 189.5 221 49.8
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.5e-46 189.5 221 49.8
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 3.3e-46 189.1 240 47.1
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 7.3e-46 188.0 225 49.3
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 7.3e-46 188.0 220 50.0
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 9.5e-46 187.6 221 50.2
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 9.5e-46 187.6 221 50.7
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.1e-45 186.4 213 52.6
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.1e-45 186.4 230 47.4
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.1e-45 186.4 236 44.9
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 6.2e-45 184.9 236 45.8
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.4e-44 183.7 218 49.5
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.8e-44 183.3 233 46.8
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.8e-44 183.3 213 47.9
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 6.8e-44 181.4 214 50.0
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 6.8e-44 181.4 213 50.2
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 6.8e-44 181.4 218 50.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.5e-43 180.3 222 47.7
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.0e-43 179.9 213 49.8
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.0e-43 179.9 222 46.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 4.4e-43 178.7 224 46.4
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 5.8e-43 178.3 221 48.0
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.8e-43 178.3 223 46.6
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 7.5e-43 177.9 218 47.7
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 7.5e-43 177.9 228 46.9
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 1.7e-42 176.8 129 73.6
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.1e-41 174.1 114 79.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.9e-41 173.3 234 45.7
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 2.4e-41 172.9 236 46.2
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.4e-41 172.9 224 47.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 9.2e-41 171.0 215 46.5
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.2e-40 170.6 236 45.3
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 7.8e-40 167.9 215 45.1
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 3.9e-39 165.6 219 45.2
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.9e-38 163.3 226 45.1
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.2e-37 160.6 230 41.7
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 4.7e-37 158.7 220 45.5
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 6.2e-37 158.3 226 43.8
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 6.2e-37 158.3 255 42.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 4.0e-36 155.6 277 39.0
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.2e-35 154.1 132 62.1
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.2e-35 154.1 230 42.6
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 5.8e-35 151.8 226 42.5
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 7.5e-35 151.4 131 60.3
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.7e-34 150.2 220 44.1
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.2e-34 149.8 169 50.3
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 3.7e-34 149.1 133 60.9
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.1e-33 145.6 133 55.6
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 5.4e-33 145.2 131 57.3
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.2e-32 144.1 220 43.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.0e-32 141.7 198 41.9
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.3e-31 140.6 181 45.3
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.7e-31 140.2 129 60.5
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 2.3e-31 139.8 223 42.2
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.3e-31 139.8 230 38.7
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 3.9e-31 139.0 175 50.9
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.5e-30 137.1 182 46.2
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 9.5e-30 134.4 120 65.8
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.6e-29 133.7 114 63.2
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.1e-28 131.0 171 46.8
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 1.8e-28 130.2 203 47.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 4.0e-28 129.0 219 38.8
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 6.8e-28 128.3 246 32.5
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 8.9e-28 127.9 114 60.5
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.6e-27 126.3 242 32.6
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.2e-25 119.4 75 82.7
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.5e-22 110.5 188 38.3
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.1e-20 102.8 132 46.2
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.3e-20 102.1 119 47.9
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 4.4e-19 99.0 167 41.3
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 4.4e-19 99.0 218 36.2
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 5.8e-19 98.6 222 31.5
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 5.8e-19 98.6 169 40.2
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 2.2e-18 96.7 92 62.0
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 6.4e-18 95.1 221 31.7
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 3.2e-17 92.8 79 62.0
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 4.6e-16 89.0 85 64.7
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.0e-15 87.8 213 30.5
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.3e-15 87.4 119 43.7
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.3e-15 86.7 79 55.7
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.0e-15 86.3 195 32.8
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 2.5e-14 83.2 92 58.7
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.1e-13 80.1 158 38.6
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 2.1e-13 80.1 54 75.9
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.8e-13 79.0 187 34.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 4.8e-13 79.0 214 27.6
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 8.1e-13 78.2 105 43.8
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.8e-12 77.0 193 32.1
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 4.0e-12 75.9 70 55.7
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 9.9e-11 71.2 52 63.5
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 3.8e-10 69.3 53 62.3
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-09 67.8 70 51.4
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 1.4e-09 67.4 54 59.3
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.9e-09 67.0 55 61.8
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-09 66.2 53 60.4
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 3.2e-09 66.2 53 60.4
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 9.3e-09 64.7 74 50.0
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.7e-08 63.2 78 50.0
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.6e-08 62.4 83 47.0
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.6e-08 62.4 83 47.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 6.0e-08 62.0 181 32.0
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 6.0e-08 62.0 181 32.0
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.5e-06 56.6 78 48.7
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.4e-06 55.1 77 39.0


User provided reference genes

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