Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B8MRUG Arachis hypogaea HOM05D007071 ORTHO05D008677 3.1e-137 491.9 267 100.0
arahy.Tifrunner.gnm1.ann1.P13BQJ Arachis hypogaea HOM05D007071 ORTHO05D008677 5.5e-134 481.1 267 97.8
Glyma.19G203500 Glycine max HOM05D007071 ORTHO05D008677 1.1e-86 323.9 311 59.8
Lj1g0020560 Lotus japonicus HOM05D007071 ORTHO05D008677 4.3e-86 322.0 315 59.7
Glyma.03G206000 Glycine max HOM05D007071 ORTHO05D008677 2.2e-82 309.7 311 57.6
VMungo1383G1243 Vigna mungo HOM05D007071 ORTHO05D008677 1.6e-80 303.5 316 57.0
Medtr7g107150 Medicago truncatula HOM05D007071 ORTHO05D008677 1.0e-79 300.8 295 61.7
Phvul.001G199700 Phaseolus vulgaris HOM05D007071 ORTHO05D008677 4.8e-77 292.0 294 59.2
Psat3g026600 Pisum sativum HOM05D007071 ORTHO05D008677 4.0e-68 262.3 286 55.6
TPR.G14411 Trifolium pratense HOM05D007071 ORTHO05D008677 2.2e-66 256.5 258 58.9
Dinv25088 Davidia involucrata HOM05D007071 ORTHO05D008677 1.0e-63 247.7 272 54.0
Cfa020101 Carpinus fangiana HOM05D007071 ORTHO05D008677 3.3e-62 242.7 293 52.2
CiPaw.09G025100 Carya illinoinensis HOM05D007071 ORTHO05D008677 3.3e-62 242.7 302 51.0
Lalb_Chr25g0287781 Lupinus albus HOM05D007071 ORTHO05D008677 4.8e-61 238.8 313 51.4
GSVIVG01022502001 Vitis vinifera HOM05D007071 ORTHO05D008677 1.4e-60 237.3 296 52.0
Actinidia37784 Actinidia chinensis HOM05D007071 ORTHO05D008677 2.4e-60 236.5 303 47.9
ECA248G1335 Erigeron canadensis HOM05D007071 ORTHO05D008677 3.4e-59 232.6 284 47.2
RcHm_v2.0_Chr3g0477671 Rosa chinensis HOM05D007071 ORTHO05D008677 3.4e-59 232.6 298 47.7
FvH4_6g21190 Fragaria vesca HOM05D007071 ORTHO05D008677 1.3e-58 230.7 292 49.0
QL07p025881 Quercus lobata HOM05D007071 ORTHO05D008677 1.3e-58 230.7 303 50.5
Potri.016G064200 Populus trichocarpa HOM05D007071 ORTHO05D008677 3.8e-58 229.2 318 44.0
CANSAT64G1821 Cannabis sativa HOM05D007071 ORTHO05D008677 8.4e-58 228.0 312 45.2
Duzib093G1750 Durio zibethinus HOM05D007071 ORTHO05D008677 1.1e-57 227.6 309 47.9
Nn2g14444 Nelumbo nucifera HOM05D007071 ORTHO05D008677 1.1e-57 227.6 326 43.6
Manes.08G038400 Manihot esculenta HOM05D007071 ORTHO05D008677 2.5e-57 226.5 323 47.4
Gohir.D09G127800 Gossypium hirsutum HOM05D007071 ORTHO05D008677 6.0e-56 221.9 307 47.2
Gorai.006G146400 Gossypium raimondii HOM05D007071 ORTHO05D008677 6.0e-56 221.9 309 47.2
TWI77G0807 Tripterygium wilfordii HOM05D007071 ORTHO05D008677 6.0e-56 221.9 327 45.6
MD14G1046200 Malus domestica HOM05D007071 ORTHO05D008677 1.3e-55 220.7 299 48.2
Migut.J00748 Erythranthe guttata HOM05D007071 ORTHO05D008677 1.8e-55 220.3 280 48.6
MELO3C009585.2 Cucumis melo HOM05D007071 ORTHO05D008677 3.9e-55 219.2 325 45.8
PGR004G1089 Punica granatum HOM05D007071 ORTHO05D008677 5.1e-55 218.8 310 44.8
Gohir.A09G131600 Gossypium hirsutum HOM05D007071 ORTHO05D008677 8.7e-55 218.0 308 46.8
HanXRQChr11g0347671 Helianthus annuus HOM05D007071 ORTHO05D008677 1.1e-54 217.6 285 43.9
Sc01g0005210 Simmondsia chinensis HOM05D007071 ORTHO05D008677 1.3e-53 214.2 325 43.4
SGA_v2.0_scaffold31G12809 Striga asiatica HOM05D007071 ORTHO05D008677 1.3e-53 214.2 284 44.7
CsaV3_3G038410 Cucumis sativus L. HOM05D007071 ORTHO05D008677 1.6e-53 213.8 325 45.2
MSTRG.5919 Avicennia marina HOM05D007071 ORTHO05D008677 4.8e-53 212.2 285 43.5
PSO339G2219 Papaver somniferum HOM05D007071 ORTHO05D008677 4.8e-53 212.2 328 41.2
vmacro07528 Vaccinium macrocarpon HOM05D007071 ORTHO05D008677 6.3e-53 211.8 334 41.6
Prupe.7G088000 Prunus persica HOM05D007071 ORTHO05D008677 1.1e-52 211.1 303 44.9
Sabra16G0066300 Salix brachista HOM05D007071 ORTHO05D008677 2.4e-52 209.9 370 37.8
THA.LOC104809942 Tarenaya hassleriana HOM05D007071 ORTHO05D008677 3.1e-52 209.5 318 40.9
Sed0020351 Sechium edule HOM05D007071 ORTHO05D008677 6.9e-52 208.4 316 43.7
Cpa.g.sc222.1 Carica papaya HOM05D007071 ORTHO05D008677 2.6e-51 206.5 331 41.1
Aqoxy2G00613 Aquilegia oxysepala HOM05D007071 ORTHO05D008677 8.4e-50 201.4 312 39.7
Sopen01g021160 Solanum pennellii HOM05D007071 ORTHO05D008677 8.4e-50 201.4 290 46.2
CARHR206610 Cardamine hirsuta HOM05D007071 ORTHO05D008677 1.9e-49 200.3 311 41.8
Rhsim03G0057500 Rhododendron simsii HOM05D007071 ORTHO05D008677 2.5e-49 199.9 266 46.6
Sp6g36270 Schrenkiella parvula HOM05D007071 ORTHO05D008677 9.3e-49 198.0 319 40.8
BolC9t59762H Brassica oleracea HOM05D007071 ORTHO05D008677 1.2e-48 197.6 305 39.0
Atru.chr8.1251 Acer truncatum HOM05D007071 ORTHO05D008677 1.6e-48 197.2 294 42.9
C09p70180 Brassica napus HOM05D007071 ORTHO05D008677 2.7e-48 196.4 305 38.7
Hund10779 Selenicereus undatus HOM05D007071 ORTHO05D008677 2.7e-48 196.4 287 43.9
Carub.0006s0547 Capsella rubella HOM05D007071 ORTHO05D008677 3.5e-48 196.1 305 42.6
AT5G06590 Arabidopsis thaliana HOM05D007071 ORTHO05D008677 4.6e-48 195.7 307 40.4
MBI11_g24568_MAGBIO Magnolia biondii HOM05D007071 ORTHO05D008677 4.6e-48 195.7 376 37.8
Thhalv10014151m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 6.1e-48 195.3 294 42.9
ClCG10G017880 Citrullus lanatus HOM05D007071 ORTHO05D008677 1.8e-47 193.7 385 38.4
FAN09G1879 Fragaria x ananassa HOM05D007071 ORTHO05D008677 2.3e-47 193.4 270 44.1
AL6G16680 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 3.0e-47 193.0 308 38.3
Aa31sc291G40 Aethionema arabicum HOM05D007071 ORTHO05D008677 3.9e-47 192.6 310 41.9
A10p29800 Brassica napus HOM05D007071 ORTHO05D008677 8.7e-47 191.4 306 37.3
Nitab4.5_0000117g0100 Nicotiana tabacum HOM05D007071 ORTHO05D008677 8.7e-47 191.4 330 38.8
BraA10t45019Z Brassica rapa HOM05D007071 ORTHO05D008677 5.7e-46 188.7 306 38.6
Lsat_1_v5_gn_1_56481 Lactuca sativa HOM05D000137 ORTHO05D000503 1.6e-45 187.2 252 45.6
Peaxi162Scf00425g00036 Petunia axillaris HOM05D007071 ORTHO05D008677 4.8e-45 185.7 285 42.1
Peaxi162Scf00645g00018 Petunia axillaris HOM05D007071 ORTHO05D008677 4.8e-45 185.7 285 42.1
FAN14G3447 Fragaria x ananassa HOM05D007071 ORTHO05D008677 7.7e-43 178.3 260 44.2
Ah.12g059560 Amaranthus hybridus HOM05D007071 ORTHO05D008677 1.7e-42 177.2 305 39.3
Cc06_g07070 Coffea canephora HOM05D007071 ORTHO05D008677 1.4e-41 174.1 289 41.2
Thhalv10014358m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 3.6e-40 169.5 269 40.5
Nitab4.5_0005508g0020 Nicotiana tabacum HOM05D007071 ORTHO05D008677 3.0e-39 166.4 247 41.3
PGSC0003DMG400031498 Solanum tuberosum HOM05D007071 ORTHO05D008677 3.0e-39 166.4 234 44.0
Peaxi162Scf00414g00006 Petunia axillaris HOM05D007071 ORTHO05D008677 2.8e-37 159.8 269 39.4
COL.COLO4_29462 Corchorus olitorius HOM05D007071 ORTHO05D008677 6.3e-37 158.7 250 42.8
Oeu028127.1 Olea europaea HOM05D007071 ORTHO05D008677 3.4e-35 152.9 224 42.4
ATR0697G054 Amborella trichopoda HOM05D007071 ORTHO05D008677 2.9e-34 149.8 356 33.1
Solyc01g056990.3 Solanum lycopersicum HOM05D007071 ORTHO05D008677 2.9e-34 149.8 236 42.4
EL10Ac5g11787 Beta vulgaris HOM05D007071 ORTHO05D008677 6.5e-34 148.7 263 38.8
Haze_20090 Corylus avellana HOM05D007071 ORTHO05D008677 2.1e-32 143.7 233 41.6
TAR633G1119 Trochodendron aralioides HOM05D007071 ORTHO05D008677 2.6e-30 136.7 111 61.3
Eucgr.A02532 Eucalyptus grandis HOM05D007071 ORTHO05D008677 4.4e-30 136.0 131 56.5
Thecc.05G182200 Theobroma cacao HOM05D007071 ORTHO05D008677 4.4e-30 136.0 111 65.8
Ciclev10012576m.g Citrus clementina HOM05D007071 ORTHO05D008677 1.7e-29 134.0 241 40.2
AUR62036298 Chenopodium quinoa HOM05D007071 ORTHO05D008677 4.1e-28 129.4 296 37.2
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 7.0e-28 128.6 290 36.9
Eucgr.C00285 Eucalyptus grandis HOM05D007071 ORTHO05D008677 1.7e-26 124.0 86 72.1
SEGI_27522 Sequoiadendron giganteum HOM05D007071 ORTHO05D008677 1.9e-25 120.6 367 28.6
CDE10G1223 Ceratophyllum demersum HOM05D007071 ORTHO05D008677 1.0e-23 114.8 110 62.7
TPR.G40805 Trifolium pratense HOM05D007071 ORTHO05D008677 1.4e-23 114.4 65 86.2
CSS0047921 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 2.3e-23 113.6 104 64.4
DCAR_020676 Daucus carota HOM05D007071 ORTHO05D008677 8.8e-23 111.7 159 43.4
Gohir.A07G089166 Gossypium hirsutum HOM05D007071 ORTHO05D008677 2.0e-22 110.5 85 68.2
arahy.Tifrunner.gnm1.ann1.88RVSM Arachis hypogaea HOM05D034159 ORTHO05D008677 4.4e-22 109.4 71 77.5
SHI31768 Sapria himalayana HOM05D007071 ORTHO05D008677 4.4e-22 109.4 91 61.5
Eucgr.A02531 Eucalyptus grandis HOM05D007071 ORTHO05D008677 1.7e-18 97.4 75 66.7
arahy.Tifrunner.gnm1.ann1.AN6BCG Arachis hypogaea HOM05D034159 ORTHO05D008677 1.1e-17 94.7 127 44.9
MD12G1047800 Malus domestica HOM05D007071 ORTHO05D008677 5.5e-17 92.4 78 59.0
Gorai.007G240500 Gossypium raimondii HOM05D007071 ORTHO05D008677 9.4e-17 91.7 160 41.9
arahy.Tifrunner.gnm1.ann1.GFC4NY Arachis hypogaea HOM05D001602 ORTHO05D001470 2.2e-13 80.5 65 67.7
Gohir.A06G128402 Gossypium hirsutum HOM05D007071 ORTHO05D008677 2.2e-13 80.5 135 37.8
CSS0001330 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 1.6e-11 74.3 64 56.2
Zm00001eb134480 Zea mays HOM05D007071 ORTHO05D008677 2.0e-11 73.9 124 36.3
AagrBONN_evm.TU.Sc2ySwM_117.1490 Anthoceros agrestis HOM05D007071 ORTHO05D008677 1.7e-10 70.9 324 24.1
CiPaw.16G104200 Carya illinoinensis HOM05D007071 ORTHO05D008677 1.1e-09 68.2 62 59.7
QL02p030777 Quercus lobata HOM05D007071 ORTHO05D008677 4.2e-09 66.2 48 68.8
Actinidia03957 Actinidia chinensis HOM05D002116 ORTHO05D002438 9.4e-09 65.1 41 78.0
SMO165G0174 Selaginella moellendorffii HOM05D007071 ORTHO05D008677 1.2e-08 64.7 90 44.4
Mapoly0045s0075 Marchantia polymorpha HOM05D007071 ORTHO05D008677 1.6e-08 64.3 97 38.1
Os12g0623400 Oryza sativa ssp. japonica HOM05D007071 ORTHO05D008677 3.6e-08 63.2 75 52.0
PGSC0003DMG400019076 Solanum tuberosum HOM05D007071 ORTHO05D008677 4.7e-08 62.8 69 46.4
Pp3c26_10880 Physcomitrium patens HOM05D007071 ORTHO05D008677 8.0e-08 62.0 191 24.6


User provided reference genes

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