Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 6.0e-187 658.3 632 100.0
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 2.3e-170 603.2 632 95.4
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 7.4e-153 545.0 632 91.8
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 9.7e-113 411.8 327 78.3
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 1.4e-87 328.2 635 68.0
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 3.0e-77 293.9 636 62.7
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 2.6e-73 280.8 629 60.6
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 3.9e-61 240.4 383 59.3
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 6.9e-58 229.6 610 64.4
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 1.4e-55 221.9 636 64.0
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 7.1e-55 219.5 617 68.9
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 6.6e-53 213.0 620 67.7
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 6.6e-53 213.0 620 67.7
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 4.3e-52 210.3 609 70.0
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.3e-51 208.8 612 71.2
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.8e-50 204.9 626 61.3
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 9.9e-49 199.1 609 68.0
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 2.9e-48 197.6 613 59.9
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 3.8e-48 197.2 608 63.5
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 1.1e-47 195.7 306 49.7
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 1.9e-47 194.9 608 60.9
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 4.2e-47 193.7 608 61.8
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.6e-46 191.8 608 62.0
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 6.0e-46 189.9 608 61.3
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 1.0e-45 189.1 614 56.7
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 3.0e-45 187.6 614 57.5
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 5.1e-45 186.8 615 57.1
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 5.1e-45 186.8 614 57.8
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 5.1e-45 186.8 615 57.1
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 5.1e-45 186.8 615 57.1
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 3.1e-42 177.6 609 65.0
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 4.0e-42 177.2 618 66.0
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 6.9e-42 176.4 632 65.5
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 9.0e-42 176.0 604 56.0
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 1.4e-39 168.7 119 70.6
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 1.4e-39 168.7 202 47.5
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 9.3e-39 166.0 606 61.6
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 1.2e-38 165.6 171 50.3
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 1.2e-38 165.6 171 52.6
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 1.6e-38 165.2 117 86.3
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 2.1e-38 164.9 185 48.1
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 2.7e-38 164.5 117 81.2
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 7.9e-38 162.9 171 52.0
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 1.0e-37 162.5 110 84.5
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 1.3e-37 162.2 172 51.2
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 2.3e-37 161.4 175 52.0
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 5.1e-37 160.2 486 74.9
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 5.1e-37 160.2 189 47.6
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 5.1e-37 160.2 109 83.5
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 5.1e-37 160.2 110 84.5
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 6.7e-37 159.8 612 56.2
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 6.7e-37 159.8 172 53.5
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 8.7e-37 159.5 109 83.5
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 1.1e-36 159.1 171 50.3
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 1.9e-36 158.3 180 47.8
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 5.6e-36 156.8 566 67.8
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 1.3e-35 155.6 408 57.6
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.6e-35 155.2 171 48.0
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 2.1e-35 154.8 167 49.1
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 2.8e-35 154.5 193 46.6
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 4.0e-34 150.6 185 47.0
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 9.0e-34 149.4 158 50.6
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 5.8e-33 146.7 172 48.3
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 3.8e-32 144.1 103 81.6
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 1.9e-31 141.7 306 38.2
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 5.5e-31 140.2 98 82.7
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 2.1e-30 138.3 157 47.8
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 2.1e-30 138.3 182 44.5
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 3.9e-29 134.0 189 41.8
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 8.7e-29 132.9 179 45.8
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 8.7e-29 132.9 176 43.2
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 4.3e-28 130.6 92 85.9
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 1.3e-27 129.0 192 46.4
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 1.1e-26 125.9 205 41.5
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 1.1e-26 125.9 188 41.5
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 3.1e-26 124.4 175 43.4
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 3.1e-26 124.4 172 43.0
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 4.1e-26 124.0 143 49.0
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 6.9e-26 123.2 166 45.2
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 6.9e-26 123.2 635 52.9
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 9.0e-26 122.9 94 64.9
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 1.5e-25 122.1 644 44.4
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 2.0e-25 121.7 93 75.3
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 3.4e-25 120.9 86 82.6
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.0e-24 119.4 92 73.9
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 1.0e-24 119.4 86 82.6
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 1.7e-24 118.6 88 84.1
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 1.7e-24 118.6 86 84.9
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 2.9e-24 117.9 167 41.9
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 5.0e-24 117.1 143 47.6
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 1.9e-23 115.2 137 47.4
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 2.5e-23 114.8 84 83.3
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 3.2e-23 114.4 149 46.3
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 4.2e-23 114.0 176 39.2
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 4.2e-23 114.0 172 41.3
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 9.4e-23 112.8 143 45.5
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 9.4e-23 112.8 85 81.2
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 2.1e-22 111.7 86 82.6
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 3.6e-22 110.9 84 82.1
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 3.6e-22 110.9 135 46.7
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 7.4e-20 103.2 82 63.4
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.3e-19 102.4 80 78.8
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 1.1e-18 99.4 225 53.8
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 1.4e-18 99.0 145 41.4
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 1.7e-16 92.0 86 70.9
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 1.7e-16 92.0 113 46.0
C07p02640 Brassica napus HOM05D026336 ORTHO05D026439 3.7e-11 74.3 72 47.2
BolC7t40662H Brassica oleracea HOM05D026336 ORTHO05D026439 3.7e-11 74.3 72 47.2
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 1.8e-10 72.0 83 47.0
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 2.4e-10 71.6 85 60.0
Actinidia11072 Actinidia chinensis HOM05D026336 ORTHO05D026439 9.1e-10 69.7 67 47.8
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 9.1e-10 69.7 60 58.3
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.5e-09 67.8 62 58.1
MD09G1090900 Malus domestica HOM05D007208 ORTHO05D009090 6.5e-08 63.5 43 60.5
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 3.6e-06 57.8 215 26.0
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 6.1e-06 57.0 243 24.3


User provided reference genes

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