Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.1e-120 435.6 209 100.0
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 9.1e-116 420.2 209 97.6
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 6.8e-87 324.3 198 77.3
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 6.8e-87 324.3 198 77.3
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 7.5e-86 320.9 201 77.1
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 3.1e-84 315.5 198 76.3
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.6e-83 313.2 198 76.3
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 2.0e-83 312.8 209 72.7
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 1.2e-80 303.5 179 78.8
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 2.1e-80 302.8 201 72.6
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.0e-79 300.4 198 73.7
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 2.3e-79 299.3 171 79.5
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 8.9e-79 297.4 171 79.5
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 3.4e-78 295.4 203 71.9
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 4.4e-78 295.0 199 72.4
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 1.7e-77 293.1 191 73.3
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 1.7e-77 293.1 188 71.3
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.7e-77 293.1 191 72.8
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.2e-77 292.7 199 71.9
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 2.8e-77 292.4 168 78.0
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 6.3e-77 291.2 191 69.1
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 8.3e-77 290.8 205 65.9
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.4e-76 290.0 188 69.7
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 2.4e-76 289.3 197 68.5
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 5.4e-76 288.1 203 66.5
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 7.0e-76 287.7 195 70.8
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 2.7e-75 285.8 171 76.6
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 2.7e-75 285.8 203 69.5
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 4.5e-75 285.0 191 69.6
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 5.9e-75 284.6 170 74.1
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 1.3e-74 283.5 190 70.5
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 1.7e-74 283.1 208 64.4
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 2.9e-74 282.3 187 70.1
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 5.0e-74 281.6 194 66.5
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.6e-74 281.2 193 69.9
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.6e-74 281.2 193 69.9
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 8.6e-74 280.8 204 67.2
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 8.6e-74 280.8 194 68.6
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 1.1e-73 280.4 169 72.2
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 1.1e-73 280.4 177 70.6
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.5e-73 280.0 187 71.1
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 3.3e-73 278.9 204 66.2
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 4.3e-73 278.5 194 65.5
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 5.6e-73 278.1 199 65.3
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 7.3e-73 277.7 204 65.7
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 7.3e-73 277.7 204 63.7
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 7.3e-73 277.7 204 67.2
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 7.3e-73 277.7 203 64.0
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 7.3e-73 277.7 206 64.1
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.2e-72 276.9 204 64.7
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.2e-72 276.9 204 64.7
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.2e-72 276.9 198 63.6
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.6e-72 276.6 168 72.6
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.6e-72 276.6 206 64.6
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 1.6e-72 276.6 191 67.5
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 3.6e-72 275.4 191 66.0
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 3.6e-72 275.4 191 69.6
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 4.7e-72 275.0 191 66.0
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 6.1e-72 274.6 168 74.4
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 6.1e-72 274.6 202 63.4
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 8.0e-72 274.2 177 68.9
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 1.0e-71 273.9 197 65.5
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.0e-71 273.9 207 65.7
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 1.4e-71 273.5 191 64.9
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.4e-71 273.5 204 64.7
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.4e-71 273.5 195 65.1
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.1e-71 272.3 191 64.4
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 3.1e-71 272.3 192 65.6
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 5.2e-71 271.6 173 69.9
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 8.9e-71 270.8 174 67.8
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 8.9e-71 270.8 191 63.9
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 8.9e-71 270.8 174 67.8
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.2e-70 270.4 174 70.7
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 2.6e-70 269.2 208 64.9
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 2.6e-70 269.2 188 67.0
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.4e-70 268.9 173 67.6
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 5.8e-70 268.1 176 69.9
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 9.8e-70 267.3 195 63.1
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 1.3e-69 266.9 165 72.7
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.3e-69 266.9 188 64.9
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.7e-69 266.5 197 63.5
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.7e-69 266.5 173 67.1
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.2e-69 266.2 166 73.5
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 3.7e-69 265.4 188 64.4
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 3.7e-69 265.4 181 63.5
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.1e-68 263.8 173 69.9
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 4.1e-68 261.9 206 61.7
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 5.4e-68 261.5 202 61.4
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 7.0e-68 261.2 190 64.2
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 9.2e-68 260.8 206 61.7
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 9.2e-68 260.8 206 60.7
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 1.2e-67 260.4 166 71.1
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 2.7e-67 259.2 216 60.2
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.6e-67 258.5 195 65.1
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 4.6e-67 258.5 183 66.1
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 1.7e-66 256.5 167 64.7
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.0e-66 255.8 184 65.2
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.0e-66 255.8 184 65.2
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.5e-65 253.4 195 63.6
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 7.3e-65 251.1 173 65.3
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 4.7e-64 248.4 198 60.6
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 4.7e-64 248.4 191 60.7
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 3.1e-63 245.7 183 63.4
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 4.0e-63 245.4 206 59.2
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 5.2e-63 245.0 168 66.1
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 6.8e-63 244.6 174 64.9
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 8.9e-63 244.2 156 76.9
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 9.8e-62 240.7 191 63.4
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 1.3e-61 240.4 145 72.4
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 1.7e-61 240.0 198 58.6
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 2.9e-61 239.2 198 58.6
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 2.9e-61 239.2 198 58.6
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 2.9e-61 239.2 152 71.7
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 8.3e-61 237.7 198 58.6
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 1.4e-60 236.9 198 58.6
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 5.4e-60 235.0 194 58.8
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 5.6e-57 224.9 282 44.3
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 1.7e-53 213.4 167 58.7
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 4.1e-52 208.8 125 71.2
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 9.2e-52 207.6 172 57.0
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 7.3e-49 198.0 152 63.8
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 7.3e-49 198.0 201 46.3
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 1.6e-48 196.8 150 68.0
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 3.1e-47 192.6 158 58.9
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 3.1e-47 192.6 197 46.7
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 1.1e-39 167.5 194 43.8
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.5e-35 152.5 191 40.8
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 4.6e-35 152.1 168 48.8
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.0e-34 149.4 169 46.2
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.1e-31 139.4 158 43.7
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 4.0e-31 139.0 165 40.0
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 9.9e-30 134.4 74 81.1
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 2.7e-27 126.3 186 34.9
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 3.7e-24 115.9 166 38.6
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.9e-20 103.6 65 63.1
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.4e-15 87.4 163 33.7
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 3.4e-14 82.8 58 62.1
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.7e-11 73.2 68 57.4
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 4.6e-11 72.4 59 59.3
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 3.3e-09 66.2 59 54.2
Medtr8g106160 Medicago truncatula HOM05D005581 ORTHO05D006792 9.0e-07 58.2 50 60.0


User provided reference genes

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