Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B5R1P0 Arachis hypogaea HOM05D002981 ORTHO05D031299 1.3e-39 166.0 85 100.0
arahy.Tifrunner.gnm1.ann1.Z077FQ Arachis hypogaea HOM05D002981 ORTHO05D003725 4.6e-18 94.4 77 67.5
arahy.Tifrunner.gnm1.ann1.QGM0MN Arachis hypogaea HOM05D002981 ORTHO05D003725 1.6e-15 85.9 79 62.0
arahy.Tifrunner.gnm1.ann1.VAQ4DL Arachis hypogaea HOM05D002981 ORTHO05D003725 4.8e-15 84.3 91 54.9
arahy.Tifrunner.gnm1.ann1.FDR7V2 Arachis hypogaea HOM05D002981 ORTHO05D003725 1.4e-14 82.8 91 53.8
arahy.Tifrunner.gnm1.ann1.KJ6PEZ Arachis hypogaea HOM05D002981 ORTHO05D003725 5.3e-14 80.9 79 60.8
VMungo0720G0399 Vigna mungo HOM05D002981 ORTHO05D003725 5.9e-13 77.4 91 50.5
arahy.Tifrunner.gnm1.ann1.S88MSF Arachis hypogaea HOM05D002981 ORTHO05D084537 7.7e-13 77.0 81 58.0
Phvul.007G215900 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 1.7e-12 75.9 91 49.5
Glyma.10G014700 Glycine max HOM05D002981 ORTHO05D003725 2.2e-12 75.5 91 49.5
arahy.Tifrunner.gnm1.ann1.6077R1 Arachis hypogaea HOM05D002981 ORTHO05D003725 2.9e-12 75.1 82 56.1
Lalb_Chr02g0146691 Lupinus albus HOM05D002981 ORTHO05D003725 2.9e-12 75.1 91 48.4
Glyma.02G014000 Glycine max HOM05D002981 ORTHO05D003725 3.8e-12 74.7 91 48.4
arahy.Tifrunner.gnm1.ann1.JXQN87 Arachis hypogaea HOM05D002981 ORTHO05D003725 1.9e-11 72.4 74 58.1
Lalb_Chr21g0309481 Lupinus albus HOM05D002981 ORTHO05D003725 1.6e-10 69.3 93 46.2
GSVIVG01031219001 Vitis vinifera HOM05D002981 ORTHO05D003725 4.6e-10 67.8 84 47.6
Gohir.A08G118600 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.0e-09 66.6 80 50.0
TAR365G0113 Trochodendron aralioides HOM05D002981 ORTHO05D003725 1.0e-09 66.6 80 48.8
Atru.chr5.1047 Acer truncatum HOM05D002981 ORTHO05D003725 1.4e-09 66.2 77 50.6
Medtr1g087520 Medicago truncatula HOM05D002981 ORTHO05D003725 1.4e-09 66.2 91 46.2
PGR044G1530 Punica granatum HOM05D002981 ORTHO05D003725 1.8e-09 65.9 78 51.3
Ciclev10020618m.g Citrus clementina HOM05D002981 ORTHO05D003725 2.3e-09 65.5 77 50.6
THA.LOC104817468 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 2.3e-09 65.5 80 48.8
Gohir.D08G139400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 3.0e-09 65.1 78 50.0
Gorai.004G143300 Gossypium raimondii HOM05D002981 ORTHO05D003725 3.0e-09 65.1 78 50.0
Cpa.g.sc18.9 Carica papaya HOM05D002981 ORTHO05D003725 3.9e-09 64.7 84 47.6
CDE02G3360 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 3.9e-09 64.7 78 50.0
Manes.05G002000 Manihot esculenta HOM05D002981 ORTHO05D003725 3.9e-09 64.7 80 48.8
Cc02_g34820 Coffea canephora HOM05D002981 ORTHO05D003725 5.1e-09 64.3 86 46.5
Oeu064809.1 Olea europaea HOM05D002981 ORTHO05D003725 5.1e-09 64.3 85 48.2
SalBow7G4351 Salvia bowleyana HOM05D002981 ORTHO05D003725 5.1e-09 64.3 84 48.8
Sed0023511 Sechium edule HOM05D002981 ORTHO05D003725 5.1e-09 64.3 41 73.2
vmacro01554 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 5.1e-09 64.3 40 77.5
ClCG09G005250 Citrullus lanatus HOM05D002981 ORTHO05D003725 6.7e-09 63.9 40 75.0
Oeu053701.1 Olea europaea HOM05D002981 ORTHO05D003725 6.7e-09 63.9 81 50.6
Os05g0156300 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 6.7e-09 63.9 72 50.0
TAR633G1423 Trochodendron aralioides HOM05D002981 ORTHO05D003725 6.7e-09 63.9 78 48.7
MELO3C015939.2 Cucumis melo HOM05D002981 ORTHO05D003725 8.8e-09 63.5 82 50.0
Eucgr.K03531 Eucalyptus grandis HOM05D002981 ORTHO05D003725 8.8e-09 63.5 91 46.2
Lj5g0008352 Lotus japonicus HOM05D002981 ORTHO05D003725 8.8e-09 63.5 91 47.3
Nn4g25650 Nelumbo nucifera HOM05D002981 ORTHO05D003725 8.8e-09 63.5 78 47.4
Psat6g163280 Pisum sativum HOM05D002981 ORTHO05D003725 8.8e-09 63.5 91 44.0
Potri.002G198300 Populus trichocarpa HOM05D002981 ORTHO05D003725 8.8e-09 63.5 78 50.0
Prupe.6G315000 Prunus persica HOM05D002981 ORTHO05D003725 8.8e-09 63.5 81 49.4
CSS0025736 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 1.1e-08 63.2 40 75.0
CANSAT54G0071 Cannabis sativa HOM05D002981 ORTHO05D003725 1.1e-08 63.2 40 75.0
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 1.1e-08 63.2 40 75.0
Duzib133G0744 Durio zibethinus HOM05D002981 ORTHO05D003725 1.1e-08 63.2 40 75.0
Duzib211G0560 Durio zibethinus HOM05D002981 ORTHO05D003725 1.1e-08 63.2 40 75.0
Gohir.D12G129900 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.1e-08 63.2 78 48.7
Gorai.008G141100 Gossypium raimondii HOM05D002981 ORTHO05D003725 1.1e-08 63.2 78 48.7
Peaxi162Scf00673g00127 Petunia axillaris HOM05D002981 ORTHO05D003725 1.1e-08 63.2 40 75.0
THA.LOC104802194 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 1.1e-08 63.2 66 54.5
unitig_21.g20026 Utricularia gibba HOM05D002981 ORTHO05D003725 1.1e-08 63.2 40 75.0
Lalb_Chr06g0166781 Lupinus albus HOM05D002981 ORTHO05D003725 1.5e-08 62.8 93 43.0
Rhsim05G0133600 Rhododendron simsii HOM05D002981 ORTHO05D003725 1.5e-08 62.8 40 75.0
Solyc01g100320.3 Solanum lycopersicum HOM05D002981 ORTHO05D003725 1.5e-08 62.8 40 75.0
Sopen01g043830 Solanum pennellii HOM05D002981 ORTHO05D003725 1.5e-08 62.8 40 75.0
PGSC0003DMG400002779 Solanum tuberosum HOM05D002981 ORTHO05D003725 1.5e-08 62.8 40 75.0
Thecc.01G310600 Theobroma cacao HOM05D002981 ORTHO05D003725 1.5e-08 62.8 40 72.5
TWI75G0141 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 1.5e-08 62.8 40 72.5
vmacro19723 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 1.5e-08 62.8 40 75.0
MSTRG.27951 Avicennia marina HOM05D002981 ORTHO05D003725 1.9e-08 62.4 90 44.4
CDE09G1190 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 1.9e-08 62.4 83 48.2
Potri.014G122800 Populus trichocarpa HOM05D002981 ORTHO05D003725 1.9e-08 62.4 78 48.7
Sabra02G0159300 Salix brachista HOM05D002981 ORTHO05D003725 1.9e-08 62.4 78 50.0
Zm00001eb131360 Zea mays HOM05D002981 ORTHO05D003725 1.9e-08 62.4 94 43.6
Carub.0004s3019 Capsella rubella HOM05D002981 ORTHO05D003725 2.5e-08 62.0 91 48.4
Gohir.A12G126400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 2.5e-08 62.0 78 47.4
HanXRQChr10g0299231 Helianthus annuus HOM05D002981 ORTHO05D003725 2.5e-08 62.0 40 72.5
Hma1.2p1_0008F-1.1_g005760 Hydrangea macrophylla HOM05D002981 ORTHO05D003725 2.5e-08 62.0 40 75.0
Lj9C217G8 Lonicera japonica HOM05D002981 ORTHO05D003725 2.5e-08 62.0 40 72.5
Nn3g21634 Nelumbo nucifera HOM05D002981 ORTHO05D003725 2.5e-08 62.0 40 72.5
QL03p018289 Quercus lobata HOM05D002981 ORTHO05D003725 2.5e-08 62.0 85 45.9
Rhsim11G0094000 Rhododendron simsii HOM05D002981 ORTHO05D003725 2.5e-08 62.0 40 72.5
Sed0000157 Sechium edule HOM05D002981 ORTHO05D003725 2.5e-08 62.0 82 48.8
ATR0706G068 Amborella trichopoda HOM05D002981 ORTHO05D003725 3.3e-08 61.6 40 72.5
BcaB02g08769 Brassica carinata HOM05D002981 ORTHO05D003725 3.3e-08 61.6 82 47.6
AUR62000684 Chenopodium quinoa HOM05D002981 ORTHO05D003725 3.3e-08 61.6 40 72.5
Ca_10298_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 3.3e-08 61.6 94 42.6
Thhalv10001515m.g Eutrema salsugineum HOM05D002981 ORTHO05D003725 3.3e-08 61.6 78 48.7
FAN05G2722 Fragaria x ananassa HOM05D002981 ORTHO05D003725 3.3e-08 61.6 81 48.1
FAN09G2340 Fragaria x ananassa HOM05D002981 ORTHO05D003725 3.3e-08 61.6 81 48.1
Lsat_1_v5_gn_5_102801 Lactuca sativa HOM05D002981 ORTHO05D003725 3.3e-08 61.6 40 72.5
Nitab4.5_0000368g0270 Nicotiana tabacum HOM05D002981 ORTHO05D003725 3.3e-08 61.6 40 70.0
Nitab4.5_0009033g0020 Nicotiana tabacum HOM05D002981 ORTHO05D003725 3.3e-08 61.6 87 43.7
Os01g0339900 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 3.3e-08 61.6 84 46.4
PSO210G1046 Papaver somniferum HOM05D002981 ORTHO05D003725 3.3e-08 61.6 40 72.5
SalBow3G0105 Salvia bowleyana HOM05D002981 ORTHO05D003725 3.3e-08 61.6 40 72.5
BcaC01g05028 Brassica carinata HOM05D002981 ORTHO05D003725 4.3e-08 61.2 80 46.2
A03p25980 Brassica napus HOM05D002981 ORTHO05D003725 4.3e-08 61.2 78 47.4
C03p30980 Brassica napus HOM05D002981 ORTHO05D003725 4.3e-08 61.2 80 46.2
BolC3t15449H Brassica oleracea HOM05D002981 ORTHO05D003725 4.3e-08 61.2 80 46.2
BraA03t11815Z Brassica rapa HOM05D002981 ORTHO05D003725 4.3e-08 61.2 78 47.4
CSS0028783 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 4.3e-08 61.2 40 70.0
CsaV3_7G029820 Cucumis sativus L. HOM05D002981 ORTHO05D003725 4.3e-08 61.2 82 47.6
Duzib138G0226 Durio zibethinus HOM05D002981 ORTHO05D003725 4.3e-08 61.2 40 72.5
MD04G1195300 Malus domestica HOM05D002981 ORTHO05D003725 4.3e-08 61.2 40 72.5
MD12G1207400 Malus domestica HOM05D002981 ORTHO05D003725 4.3e-08 61.2 69 53.6
TWI18G0728 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 4.3e-08 61.2 40 72.5
TAR362G0641 Trochodendron aralioides HOM05D002981 ORTHO05D003725 4.3e-08 61.2 40 72.5
Aqoxy2G02802 Aquilegia oxysepala HOM05D002981 ORTHO05D003725 5.7e-08 60.8 40 72.5
MSTRG.5139 Avicennia marina HOM05D002981 ORTHO05D003725 5.7e-08 60.8 85 45.9
CAN.G1273.1 Capsicum annuum HOM05D002981 ORTHO05D003725 5.7e-08 60.8 87 43.7
FvH4_6g07230 Fragaria vesca HOM05D002981 ORTHO05D003725 5.7e-08 60.8 81 48.1
FAN02G4218 Fragaria x ananassa HOM05D002981 ORTHO05D003725 5.7e-08 60.8 40 72.5
FAN14G0083 Fragaria x ananassa HOM05D002981 ORTHO05D003725 5.7e-08 60.8 40 72.5
Gorai.007G124200 Gossypium raimondii HOM05D002981 ORTHO05D003725 5.7e-08 60.8 80 45.0
RcHm_v2.0_Chr3g0456861 Rosa chinensis HOM05D002981 ORTHO05D003725 5.7e-08 60.8 40 72.5
TPR.G19768 Trifolium pratense HOM05D002981 ORTHO05D003725 5.7e-08 60.8 91 44.0
unitig_26.g10138 Utricularia gibba HOM05D002981 ORTHO05D003725 5.7e-08 60.8 40 72.5
Zm00001eb282710 Zea mays HOM05D002981 ORTHO05D003725 5.7e-08 60.8 87 43.7
Aqoxy2G02233 Aquilegia oxysepala HOM05D002981 ORTHO05D031299 7.4e-08 60.5 54 57.4
BcaB01g03165 Brassica carinata HOM05D002981 ORTHO05D003725 7.4e-08 60.5 91 47.3
CiPaw.08G156600 Carya illinoinensis HOM05D002981 ORTHO05D003725 7.4e-08 60.5 28 96.4
AUR62005272 Chenopodium quinoa HOM05D002981 ORTHO05D003725 7.4e-08 60.5 84 46.4
DCAR_029360 Daucus carota HOM05D002981 ORTHO05D003725 7.4e-08 60.5 40 72.5
Dinv24424 Davidia involucrata HOM05D002981 ORTHO05D003725 7.4e-08 60.5 40 70.0
Lj5A337G17 Lonicera japonica HOM05D002981 ORTHO05D003725 7.4e-08 60.5 40 70.0
Hund07135 Selenicereus undatus HOM05D002981 ORTHO05D003725 7.4e-08 60.5 28 96.4
Sc09g0002680 Simmondsia chinensis HOM05D002981 ORTHO05D003725 7.4e-08 60.5 28 96.4
SGA_v2.0_scaffold80G25880 Striga asiatica HOM05D002981 ORTHO05D003725 9.7e-08 60.1 77 49.4
EL10Ac4g09830 Beta vulgaris HOM05D002981 ORTHO05D003725 1.3e-07 59.7 79 50.6
Oeu013220.1 Olea europaea HOM05D002981 ORTHO05D003725 1.3e-07 59.7 81 48.1
Phvul.001G225600 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 1.3e-07 59.7 72 45.8
VMungo1383G3526 Vigna mungo HOM05D002981 ORTHO05D003725 1.3e-07 59.7 72 47.2
Aa31LG1G28770 Aethionema arabicum HOM05D002981 ORTHO05D003725 1.7e-07 59.3 40 70.0
Dinv30871 Davidia involucrata HOM05D002981 ORTHO05D003725 1.7e-07 59.3 28 92.9
ECA234G4491 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.7e-07 59.3 32 81.2
Gohir.A07G127500 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.7e-07 59.3 40 67.5
Gorai.001G143100 Gossypium raimondii HOM05D002981 ORTHO05D003725 1.7e-07 59.3 40 67.5
Manes.09G175600 Manihot esculenta HOM05D002981 ORTHO05D003725 1.7e-07 59.3 40 67.5
PSO761G0326 Papaver somniferum HOM05D002981 ORTHO05D003725 1.7e-07 59.3 91 42.9
Sabra14G0091200 Salix brachista HOM05D002981 ORTHO05D003725 1.7e-07 59.3 78 46.2
Hund21746 Selenicereus undatus HOM05D002981 ORTHO05D003725 1.7e-07 59.3 28 92.9
vmacro21240 Vaccinium macrocarpon HOM05D000161 ORTHO05D000111 1.7e-07 59.3 65 58.5
AL4G47030 Arabidopsis lyrata HOM05D002981 ORTHO05D003725 2.2e-07 58.9 68 51.5
AT2G47470 Arabidopsis thaliana HOM05D002981 ORTHO05D003725 2.2e-07 58.9 68 51.5
Sp4g29410 Schrenkiella parvula HOM05D002981 ORTHO05D003725 2.2e-07 58.9 70 51.4
SEGI_15151 Sequoiadendron giganteum HOM05D002981 ORTHO05D003725 2.2e-07 58.9 90 44.4
Sc16g0008930 Simmondsia chinensis HOM05D002981 ORTHO05D003725 2.2e-07 58.9 65 52.3
TPR.G1663 Trifolium pratense HOM05D002981 ORTHO05D003725 2.2e-07 58.9 88 43.2
TWI56G0814 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 2.2e-07 58.9 28 92.9
A05p00460 Brassica napus HOM05D002981 ORTHO05D003725 3.7e-07 58.2 91 46.2
C04p00410 Brassica napus HOM05D002981 ORTHO05D003725 3.7e-07 58.2 91 46.2
BolC4t21686H Brassica oleracea HOM05D002981 ORTHO05D003725 3.7e-07 58.2 91 46.2
BraA05t19044Z Brassica rapa HOM05D002981 ORTHO05D003725 3.7e-07 58.2 91 46.2
Peaxi162Scf00071g00438 Petunia axillaris HOM05D002981 ORTHO05D003725 3.7e-07 58.2 40 67.5
Haze_05013 Corylus avellana HOM05D002981 ORTHO05D003725 4.8e-07 57.8 66 50.0
Glyma.19G229000 Glycine max HOM05D002981 ORTHO05D003725 4.8e-07 57.8 95 38.9
Lj1g0022270 Lotus japonicus HOM05D002981 ORTHO05D003725 4.8e-07 57.8 88 44.3
AagrBONN_evm.TU.Sc2ySwM_228.808 Anthoceros agrestis HOM05D002981 ORTHO05D003725 6.3e-07 57.4 40 67.5
DCAR_025272 Daucus carota HOM05D002981 ORTHO05D003725 6.3e-07 57.4 28 89.3
ECA234G2827 Erigeron canadensis HOM05D002981 ORTHO05D003725 6.3e-07 57.4 40 65.0
Migut.N02114 Erythranthe guttata HOM05D002981 ORTHO05D003725 6.3e-07 57.4 40 67.5
SHI12762 Sapria himalayana HOM05D002981 ORTHO05D003725 6.3e-07 57.4 86 44.2
SGA_v2.0_scaffold81G26125 Striga asiatica HOM05D002981 ORTHO05D003725 6.3e-07 57.4 74 50.0
CiPaw.07G115400 Carya illinoinensis HOM05D002981 ORTHO05D003725 8.2e-07 57.0 28 89.3
DCAR_005415 Daucus carota HOM05D002981 ORTHO05D003725 8.2e-07 57.0 40 67.5
PSO675G3700 Papaver somniferum HOM05D001581 ORTHO05D001479 8.2e-07 57.0 28 89.3
QL12p028974 Quercus lobata HOM05D002981 ORTHO05D003725 8.2e-07 57.0 28 89.3
Mapoly0016s0144 Marchantia polymorpha HOM05D002981 ORTHO05D003725 1.1e-06 56.6 40 62.5
HPP92_016960 Vanilla planifolia HOM05D002981 ORTHO05D003725 1.1e-06 56.6 79 45.6
Cc00_g19780 Coffea canephora HOM05D002981 ORTHO05D031299 1.4e-06 56.2 30 83.3
Medtr7g112040 Medicago truncatula HOM05D002981 ORTHO05D003725 1.4e-06 56.2 84 42.9
Lsat_1_v5_gn_7_73501 Lactuca sativa HOM05D002981 ORTHO05D003725 1.8e-06 55.8 40 62.5
Ca_09297_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 4.1e-06 54.7 96 38.5
Cc00_g18950 Coffea canephora HOM05D002981 ORTHO05D003725 4.1e-06 54.7 39 66.7
Haze_04080 Corylus avellana HOM05D002981 ORTHO05D003725 4.1e-06 54.7 78 44.9
Gohir.D11G116000 Gossypium hirsutum HOM05D002981 ORTHO05D003725 6.9e-06 53.9 86 44.2
SMO306G0009 Selaginella moellendorffii HOM05D002981 ORTHO05D003725 9.1e-06 53.5 28 75.0


User provided reference genes

Program Settings