Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B2SP7Q Arachis hypogaea HOM05D003646 ORTHO05D023331 1.7e-41 172.2 82 100.0
arahy.Tifrunner.gnm1.ann1.JWY1N0 Arachis hypogaea HOM05D003646 ORTHO05D023331 7.3e-37 156.8 82 92.7
arahy.Tifrunner.gnm1.ann1.ZHHZ35 Arachis hypogaea HOM05D003646 ORTHO05D004503 9.0e-27 123.2 69 85.5
arahy.Tifrunner.gnm1.ann1.FH5WCV Arachis hypogaea HOM05D003646 ORTHO05D023331 1.2e-26 122.9 68 88.2
MELO3C004917.2 Cucumis melo HOM05D003646 ORTHO05D004503 1.1e-19 99.8 70 70.0
CsaV3_1G013880 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.1e-19 99.8 70 70.0
Psat1g086840 Pisum sativum HOM05D003646 ORTHO05D004503 1.1e-19 99.8 69 73.9
Medtr6g023975 Medicago truncatula HOM05D003646 ORTHO05D004503 1.8e-19 99.0 69 73.9
TWI56G0364 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 4.0e-19 97.8 69 69.6
Sed0021199 Sechium edule HOM05D003646 ORTHO05D004503 5.3e-19 97.4 69 68.1
PGSC0003DMG400020212 Solanum tuberosum HOM05D003646 ORTHO05D004503 5.3e-19 97.4 69 68.1
Cfa007232 Carpinus fangiana HOM05D003646 ORTHO05D004503 6.9e-19 97.1 69 69.6
CANSAT64G2942 Cannabis sativa HOM05D003646 ORTHO05D004503 9.0e-19 96.7 69 69.6
CDE05G3065 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 9.0e-19 96.7 69 66.7
MELO3C008194.2 Cucumis melo HOM05D003646 ORTHO05D004503 9.0e-19 96.7 69 69.6
Hma1.2p1_0279F.1_g112713 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 9.0e-19 96.7 69 68.1
Hma1.2p1_2636F.1_g325800 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 9.0e-19 96.7 69 68.1
Nitab4.5_0011569g0050 Nicotiana tabacum HOM05D003646 ORTHO05D004503 9.0e-19 96.7 68 67.6
TPR.G16204 Trifolium pratense HOM05D003646 ORTHO05D004503 9.0e-19 96.7 69 71.0
CDE02G1734 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 1.2e-18 96.3 69 66.7
Ca_04435_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 1.2e-18 96.3 69 71.0
Dinv33342 Davidia involucrata HOM05D003646 ORTHO05D023331 1.2e-18 96.3 66 72.7
Solyc02g094120.3 Solanum lycopersicum HOM05D003646 ORTHO05D004503 1.5e-18 95.9 69 68.1
TPR.G38353 Trifolium pratense HOM05D003646 ORTHO05D004503 1.5e-18 95.9 70 67.1
Sopen02g038740 Solanum pennellii HOM05D003646 ORTHO05D004503 2.0e-18 95.5 69 66.7
Duzib187G0941 Durio zibethinus HOM05D003646 ORTHO05D004503 2.6e-18 95.1 70 67.1
TWI36G1744 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 3.4e-18 94.7 69 65.2
Haze_14869 Corylus avellana HOM05D003646 ORTHO05D004503 4.5e-18 94.4 85 57.6
Atru.chr6.2563 Acer truncatum HOM05D003646 ORTHO05D004503 5.8e-18 94.0 71 66.2
Actinidia04439 Actinidia chinensis HOM05D003646 ORTHO05D004503 5.8e-18 94.0 69 66.7
FAN11G3558 Fragaria x ananassa HOM05D003646 ORTHO05D004503 5.8e-18 94.0 69 68.1
FAN14G4384 Fragaria x ananassa HOM05D003646 ORTHO05D004503 5.8e-18 94.0 69 68.1
Thecc.04G035300 Theobroma cacao HOM05D003646 ORTHO05D004503 5.8e-18 94.0 69 65.2
CiPaw.03G055000 Carya illinoinensis HOM05D003646 ORTHO05D004503 7.6e-18 93.6 69 68.1
Ciclev10015526m.g Citrus clementina HOM05D003646 ORTHO05D004503 7.6e-18 93.6 70 68.6
TAR622G1416 Trochodendron aralioides HOM05D003646 ORTHO05D004503 7.6e-18 93.6 75 66.7
Cpa.g.sc171.20 Carica papaya HOM05D003646 ORTHO05D004503 1.0e-17 93.2 84 57.1
Duzib147G0655 Durio zibethinus HOM05D003646 ORTHO05D004503 1.0e-17 93.2 69 68.1
Lalb_Chr21g0317451 Lupinus albus HOM05D003646 ORTHO05D004503 1.0e-17 93.2 69 68.1
Actinidia30882 Actinidia chinensis HOM05D003646 ORTHO05D004503 1.3e-17 92.8 69 65.2
FAN23G1915 Fragaria x ananassa HOM05D003646 ORTHO05D001720 1.3e-17 92.8 66 71.2
FAN26G1520 Fragaria x ananassa HOM05D003646 ORTHO05D001720 1.3e-17 92.8 66 71.2
PSO017G2867 Papaver somniferum HOM05D003646 ORTHO05D004503 1.3e-17 92.8 72 66.7
PSO478G1257 Papaver somniferum HOM05D003646 ORTHO05D004503 1.3e-17 92.8 72 66.7
QL02p071550 Quercus lobata HOM05D003646 ORTHO05D004503 1.3e-17 92.8 71 66.2
Rhsim08G0043500 Rhododendron simsii HOM05D003646 ORTHO05D004503 1.3e-17 92.8 69 63.8
Gohir.A07G227900 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.7e-17 92.4 69 65.2
Gohir.D07G235000 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.7e-17 92.4 69 65.2
Gorai.001G270800 Gossypium raimondii HOM05D003646 ORTHO05D004503 1.7e-17 92.4 69 65.2
Lj1g0013072 Lotus japonicus HOM05D003646 ORTHO05D004503 1.7e-17 92.4 70 64.3
Manes.15G160200 Manihot esculenta HOM05D003646 ORTHO05D004503 1.7e-17 92.4 69 66.7
Os08g0530400 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 1.7e-17 92.4 69 66.7
Peaxi162Scf00420g00552 Petunia axillaris HOM05D003646 ORTHO05D004503 1.7e-17 92.4 71 63.4
Sabra16G0211900 Salix brachista HOM05D003646 ORTHO05D004503 1.7e-17 92.4 70 65.7
Zm00001eb036560 Zea mays HOM05D003646 ORTHO05D004503 1.7e-17 92.4 69 66.7
HanXRQChr07g0198211 Helianthus annuus HOM05D003646 ORTHO05D004503 2.2e-17 92.0 69 66.7
GSVIVG01033099001 Vitis vinifera HOM05D003646 ORTHO05D004503 2.2e-17 92.0 69 65.2
Oeu013941.2 Olea europaea HOM05D003646 ORTHO05D004503 3.8e-17 91.3 69 69.6
Oeu035221.1 Olea europaea HOM05D003646 ORTHO05D004503 3.8e-17 91.3 71 66.2
CAN.G473.96 Capsicum annuum HOM05D003646 ORTHO05D004503 4.9e-17 90.9 69 66.7
Psat3g164760 Pisum sativum HOM05D003646 ORTHO05D004503 4.9e-17 90.9 69 65.2
AUR62003508 Chenopodium quinoa HOM05D003646 ORTHO05D004503 6.5e-17 90.5 69 66.7
MBI07_g34622_MAGBIO Magnolia biondii HOM05D003646 ORTHO05D004503 6.5e-17 90.5 69 65.2
ATR0561G114 Amborella trichopoda HOM05D003646 ORTHO05D004503 1.1e-16 89.7 69 66.7
Phvul.004G054200 Phaseolus vulgaris HOM05D003646 ORTHO05D004503 1.1e-16 89.7 69 65.2
Glyma.19G071800 Glycine max HOM05D003646 ORTHO05D004503 1.4e-16 89.4 69 66.7
HanXRQChr14g0450741 Helianthus annuus HOM05D003646 ORTHO05D004503 1.4e-16 89.4 69 63.8
RcHm_v2.0_Chr2g0175501 Rosa chinensis HOM05D003646 ORTHO05D004503 1.4e-16 89.4 69 62.3
BolC5t30091H Brassica oleracea HOM05D003646 ORTHO05D004503 1.9e-16 89.0 72 61.1
Lj2g0025838 Lotus japonicus HOM05D003646 ORTHO05D004503 1.9e-16 89.0 69 65.2
THA.LOC104821116 Tarenaya hassleriana HOM05D003646 ORTHO05D004503 1.9e-16 89.0 70 62.9
Gohir.D09G036700 Gossypium hirsutum HOM05D003646 ORTHO05D004503 2.5e-16 88.6 69 63.8
Gorai.006G041700 Gossypium raimondii HOM05D003646 ORTHO05D004503 2.5e-16 88.6 69 63.8
FAN02G3516 Fragaria x ananassa HOM05D003646 ORTHO05D004503 3.2e-16 88.2 69 63.8
TAR374G0357 Trochodendron aralioides HOM05D003646 ORTHO05D004503 3.2e-16 88.2 67 67.2
Aa31LG5G11030 Aethionema arabicum HOM05D003646 ORTHO05D004503 4.2e-16 87.8 70 64.3
Aqoxy5G03396 Aquilegia oxysepala HOM05D003646 ORTHO05D004503 4.2e-16 87.8 69 62.3
CSS0046571 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 4.2e-16 87.8 69 63.8
Nn3g16489 Nelumbo nucifera HOM05D003646 ORTHO05D004503 4.2e-16 87.8 69 62.3
PGR083G0278 Punica granatum HOM05D003646 ORTHO05D004503 4.2e-16 87.8 69 65.2
C05p13540 Brassica napus HOM05D003646 ORTHO05D004503 5.5e-16 87.4 72 59.7
Gohir.A09G035500 Gossypium hirsutum HOM05D003646 ORTHO05D004503 7.1e-16 87.0 69 62.3
MD09G1011300 Malus domestica HOM05D003646 ORTHO05D004503 7.1e-16 87.0 69 62.3
SalBow7G3637 Salvia bowleyana HOM05D003646 ORTHO05D004503 7.1e-16 87.0 69 62.3
Ca_26781_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 9.3e-16 86.7 69 62.3
FvH4_6g53430 Fragaria vesca HOM05D003646 ORTHO05D004503 9.3e-16 86.7 69 63.8
Sp3g00180 Schrenkiella parvula HOM05D003646 ORTHO05D004503 9.3e-16 86.7 69 60.9
ECA238G3019 Erigeron canadensis HOM05D003646 ORTHO05D004503 1.2e-15 86.3 69 59.4
Prupe.3G305700 Prunus persica HOM05D003646 ORTHO05D004503 1.2e-15 86.3 69 60.9
Thhalv10022262m.g Eutrema salsugineum HOM05D003646 ORTHO05D004503 1.6e-15 85.9 69 59.4
SalBow4G1548 Salvia bowleyana HOM05D003646 ORTHO05D004503 2.1e-15 85.5 69 59.4
Ah.03g147470 Amaranthus hybridus HOM05D003646 ORTHO05D004503 2.7e-15 85.1 69 63.8
Eucgr.J02338 Eucalyptus grandis HOM05D003646 ORTHO05D004503 2.7e-15 85.1 70 60.0
Potri.001G330900 Populus trichocarpa HOM05D003646 ORTHO05D004503 2.7e-15 85.1 69 62.3
MSTRG.24091 Avicennia marina HOM05D003646 ORTHO05D004503 3.5e-15 84.7 69 60.9
Carub.0003s0017 Capsella rubella HOM05D003646 ORTHO05D004503 4.6e-15 84.3 69 60.9
CARHR075040 Cardamine hirsuta HOM05D003646 ORTHO05D004503 4.6e-15 84.3 69 60.9
FvH4_6g53352 Fragaria vesca HOM05D003646 ORTHO05D004503 4.6e-15 84.3 66 65.2
MD16G1118100 Malus domestica HOM05D003646 ORTHO05D004503 4.6e-15 84.3 69 62.3
Manes.17G103400 Manihot esculenta HOM05D003646 ORTHO05D004503 4.6e-15 84.3 69 58.0
A06p11420 Brassica napus HOM05D003646 ORTHO05D004503 7.9e-15 83.6 75 57.3
BraA06t24320Z Brassica rapa HOM05D003646 ORTHO05D004503 7.9e-15 83.6 75 57.3
Hund29483 Selenicereus undatus HOM05D003646 ORTHO05D004503 7.9e-15 83.6 69 62.3
Hund29484 Selenicereus undatus HOM05D003646 ORTHO05D004503 7.9e-15 83.6 69 62.3
SGA_v2.0_scaffold154G37169 Striga asiatica HOM05D003646 ORTHO05D004503 7.9e-15 83.6 76 60.5
Prupe.1G227000 Prunus persica HOM05D003646 ORTHO05D004503 1.0e-14 83.2 69 59.4
AL3G10220 Arabidopsis lyrata HOM05D003646 ORTHO05D004503 1.3e-14 82.8 69 58.0
AT3G01910 Arabidopsis thaliana HOM05D003646 ORTHO05D004503 1.3e-14 82.8 69 58.0
C02p48410 Brassica napus HOM05D003646 ORTHO05D004503 1.3e-14 82.8 70 58.6
BcaC03g16939 Brassica carinata HOM05D003646 ORTHO05D004503 1.8e-14 82.4 69 59.4
Migut.F00068 Erythranthe guttata HOM05D003646 ORTHO05D004503 1.8e-14 82.4 66 63.6
FvH4_4g23890 Fragaria vesca HOM05D003646 ORTHO05D004503 1.8e-14 82.4 69 59.4
FAN12G1917 Fragaria x ananassa HOM05D003646 ORTHO05D004503 1.8e-14 82.4 69 59.4
Migut.K01461 Erythranthe guttata HOM05D003646 ORTHO05D004503 2.3e-14 82.0 64 62.5
unitig_578.g15929 Utricularia gibba HOM05D003646 ORTHO05D004503 2.3e-14 82.0 69 58.0
FAN07G1027 Fragaria x ananassa HOM05D003646 ORTHO05D004503 3.0e-14 81.6 69 59.4
FAN17G0152 Fragaria x ananassa HOM05D003646 ORTHO05D004503 3.0e-14 81.6 69 59.4
BraA02t08098Z Brassica rapa HOM05D003646 ORTHO05D004503 8.7e-14 80.1 89 51.7
BcaC05g25479 Brassica carinata HOM05D003646 ORTHO05D004503 1.5e-13 79.3 69 56.5
A02p30850 Brassica napus HOM05D003646 ORTHO05D004503 1.5e-13 79.3 89 51.7
Os12g0442800 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 1.5e-13 79.3 67 56.7
Actinidia20705 Actinidia chinensis HOM05D003646 ORTHO05D004503 4.3e-13 77.8 70 57.1
Mapoly0004s0050 Marchantia polymorpha HOM05D003646 ORTHO05D004503 7.4e-13 77.0 65 58.5
Actinidia09655 Actinidia chinensis HOM05D003646 ORTHO05D023331 1.3e-12 76.3 69 55.1
SGA_v2.0_scaffold253G45201 Striga asiatica HOM05D003646 ORTHO05D004503 1.3e-12 76.3 79 49.4
BolC2t10871H Brassica oleracea HOM05D003646 ORTHO05D004503 1.6e-12 75.9 70 54.3
arahy.Tifrunner.gnm1.ann1.WU8KPG Arachis hypogaea HOM05D003646 ORTHO05D083789 4.8e-12 74.3 59 67.8
arahy.Tifrunner.gnm1.ann1.415AAL Arachis hypogaea HOM05D003646 ORTHO05D004503 8.2e-12 73.6 57 68.4
Lsat_1_v5_gn_2_92941 Lactuca sativa HOM05D003646 ORTHO05D004503 6.9e-11 70.5 69 53.6
CBR_g21855 Chara braunii HOM05D003646 ORTHO05D004503 2.6e-10 68.6 68 50.0
ClCG03G002950 Citrullus lanatus HOM05D003646 ORTHO05D004503 5.8e-10 67.4 69 53.6
SMO145G0143 Selaginella moellendorffii HOM05D003646 ORTHO05D004503 1.3e-09 66.2 62 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2970 Anthoceros agrestis HOM05D003646 ORTHO05D004503 2.2e-09 65.5 62 51.6
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 5.0e-09 64.3 64 54.7
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.4e-08 62.8 40 72.5
vmacro18340 Vaccinium macrocarpon HOM05D003646 ORTHO05D004503 1.9e-08 62.4 42 71.4
Cc07_g00790 Coffea canephora HOM05D003646 ORTHO05D004503 2.5e-08 62.0 41 70.7
COL.COLO4_17205 Corchorus olitorius HOM05D003646 ORTHO05D004503 2.5e-08 62.0 41 68.3
DCAR_021791 Daucus carota HOM05D003646 ORTHO05D004503 2.5e-08 62.0 40 72.5
Lj7A608G42 Lonicera japonica HOM05D003646 ORTHO05D004503 2.5e-08 62.0 40 72.5
SHI03945 Sapria himalayana HOM05D000105 ORTHO05D000023 4.2e-08 61.2 39 69.2
Sc03g0006580 Simmondsia chinensis HOM05D003646 ORTHO05D004503 5.5e-08 60.8 40 72.5
HPP92_007003 Vanilla planifolia HOM05D003646 ORTHO05D004503 7.1e-08 60.5 40 67.5
ClCG11G007080 Citrullus lanatus HOM05D003646 ORTHO05D004503 9.3e-08 60.1 58 55.2
AUR62017819 Chenopodium quinoa HOM05D003646 ORTHO05D004503 1.6e-07 59.3 40 70.0
VMungo0464G0965 Vigna mungo HOM05D003646 ORTHO05D004503 3.5e-07 58.2 42 69.0
BcaC05g25487 Brassica carinata HOM05D003646 ORTHO05D004503 4.6e-07 57.8 46 60.9
Pp3c4_10110 Physcomitrium patens HOM05D003646 ORTHO05D004503 1.8e-06 55.8 63 52.4
Rhsim12G0099200 Rhododendron simsii HOM05D003646 ORTHO05D004503 1.8e-06 55.8 40 60.0
Medtr7g033410 Medicago truncatula HOM05D003646 ORTHO05D004503 3.0e-06 55.1 40 62.5


User provided reference genes

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