Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 0.0e+00 1532.7 783 100.0
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 0.0e+00 1488.0 809 94.8
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 2.7e-245 852.4 822 58.5
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-241 840.5 824 57.6
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 9.2e-238 827.4 875 54.9
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 3.6e-234 815.5 855 55.8
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 3.1e-233 812.4 859 55.1
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 9.9e-232 807.4 859 54.7
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.1e-230 803.9 828 56.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 4.1e-230 802.0 858 54.5
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 7.8e-229 797.7 861 54.1
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.5e-227 793.5 845 54.1
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 8.1e-226 787.7 856 54.2
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.9e-223 779.2 857 53.3
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 6.6e-220 768.1 820 54.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.1e-219 767.3 824 54.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 5.6e-219 765.0 762 58.0
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.3e-218 763.8 854 53.3
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 4.2e-214 748.8 858 51.7
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 6.7e-212 741.5 827 52.6
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.2e-208 730.7 702 58.3
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.9e-203 713.4 865 48.7
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 6.2e-202 708.4 864 49.4
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.4e-201 707.2 852 48.9
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 4.9e-199 698.7 860 49.3
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 6.5e-199 698.4 852 49.3
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.6e-197 693.7 850 49.2
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 4.6e-197 692.2 801 51.4
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 7.9e-197 691.4 858 47.3
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.8e-196 690.3 821 49.3
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 1.8e-196 690.3 848 49.5
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 5.1e-196 688.7 853 48.9
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 5.1e-196 688.7 823 50.2
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.9e-195 686.8 867 47.6
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.5e-195 686.4 852 48.9
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.3e-195 685.6 857 48.9
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.7e-195 685.3 858 47.2
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 9.6e-195 684.5 829 49.1
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.8e-194 682.9 836 48.0
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 2.4e-193 679.9 867 48.2
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.1e-193 679.5 861 46.5
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 4.1e-193 679.1 774 50.8
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.6e-192 676.4 864 48.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 5.0e-191 672.2 855 47.5
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.9e-190 670.2 754 51.1
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 4.6e-189 665.6 855 47.7
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.8e-188 663.7 837 49.1
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.0e-188 662.9 854 46.3
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.5e-187 660.6 836 47.1
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 3.1e-185 652.9 876 47.1
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 9.1e-185 651.4 860 47.1
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 6.5e-183 645.2 856 45.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.9e-182 643.7 898 45.5
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 4.2e-182 642.5 883 44.5
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.5e-182 642.1 784 47.8
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.2e-181 641.0 868 45.5
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 4.6e-181 639.0 881 45.3
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 7.9e-181 638.3 780 48.3
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.4e-180 637.5 858 46.2
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.1e-179 634.4 831 46.0
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 9.7e-179 631.3 749 50.5
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 3.7e-178 629.4 863 46.6
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 3.7e-178 629.4 797 46.0
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 3.7e-178 629.4 847 45.1
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.2e-176 624.4 752 50.1
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 2.0e-176 623.6 781 46.7
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 2.6e-176 623.2 851 46.1
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 2.6e-176 623.2 1068 40.4
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 5.9e-176 622.1 819 46.8
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.3e-175 620.9 768 48.2
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.5e-174 616.7 845 44.4
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.5e-174 616.7 926 43.8
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 4.2e-174 615.9 786 47.6
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.2e-173 614.4 730 48.8
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 2.1e-173 613.6 864 44.6
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.4e-172 610.9 834 45.6
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.2e-172 609.0 869 45.0
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 7.4e-171 605.1 862 44.4
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 3.7e-170 602.8 854 44.4
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 8.2e-170 601.7 840 44.4
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 3.1e-169 599.7 860 44.2
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 7.0e-169 598.6 761 47.4
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 2.0e-168 597.0 861 44.1
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 4.5e-168 595.9 779 46.1
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 5.9e-168 595.5 858 43.9
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 7.7e-168 595.1 805 44.1
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.5e-166 590.9 750 47.3
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.9e-166 590.5 779 46.3
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.5e-166 590.1 811 44.8
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 3.2e-166 589.7 845 44.6
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 9.4e-166 588.2 852 44.0
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.6e-165 587.4 863 43.8
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.7e-165 586.6 813 43.9
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.8e-164 583.9 790 45.6
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 5.7e-163 578.9 720 48.6
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 2.4e-161 573.5 813 43.1
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 5.3e-161 572.4 862 44.2
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.7e-160 570.1 846 43.9
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.3e-159 567.8 544 57.5
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.2e-159 567.0 799 44.7
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 8.5e-159 565.1 851 43.6
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 2.5e-158 563.5 854 43.2
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 4.2e-158 562.8 854 43.0
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 9.4e-158 561.6 933 40.3
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 2.7e-157 560.1 857 43.1
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 3.6e-157 559.7 917 41.1
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-156 557.4 853 43.3
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.8e-156 557.4 723 47.7
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 5.2e-156 555.8 831 43.9
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 3.4e-155 553.1 869 42.2
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 5.4e-153 545.8 852 42.7
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.6e-152 544.3 853 41.5
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 3.0e-148 530.0 804 44.0
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 3.0e-148 530.0 861 41.2
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 4.4e-147 526.2 800 42.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.5e-142 510.4 803 41.7
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 7.3e-142 508.8 840 41.5
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 2.1e-141 507.3 840 41.8
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 8.9e-140 501.9 730 44.4
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 4.9e-138 496.1 580 49.0
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 3.6e-133 479.9 549 51.9
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.1e-126 458.4 819 38.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.2e-124 449.5 546 49.6
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 8.9e-124 448.7 850 38.1
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.5e-123 448.0 743 40.2
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.1e-116 423.7 837 36.9
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 4.4e-115 419.9 702 40.2
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.2e-113 413.7 437 53.8
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.2e-113 413.7 744 39.2
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 7.1e-113 412.5 686 39.7
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 2.7e-104 384.0 522 45.4
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 4.9e-98 363.2 812 32.6
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.8e-93 347.4 387 52.7
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 2.8e-93 347.4 578 41.3
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 6.3e-77 293.1 532 37.0
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.5e-73 281.2 800 30.0
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.1e-70 272.3 705 30.8
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.8e-69 267.7 643 31.4
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.4e-63 248.8 274 55.5
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 9.7e-62 242.7 362 42.8
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.8e-53 214.5 237 51.5
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.7e-50 205.3 310 42.9
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.0e-39 169.5 176 56.8
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 3.1e-36 157.9 170 52.4
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.6e-34 150.2 173 46.2
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 1.1e-20 106.3 315 27.3
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.9e-17 95.5 58 79.3
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-13 82.8 184 37.0
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.3e-13 82.8 184 37.0
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.7e-13 82.4 93 40.9
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 8.3e-13 80.1 138 40.6
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 3.2e-12 78.2 101 48.5
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-11 75.9 169 34.3
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-09 69.7 161 36.6
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-09 69.7 161 36.6
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 4.3e-09 67.8 83 44.6
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 8.1e-08 63.5 84 44.0
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-07 63.2 126 36.5
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-07 62.4 49 59.2
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 4.0e-07 61.2 174 30.5
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 6.8e-07 60.5 37 75.7


User provided reference genes

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