Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 0.0e+00 1131.3 554 100.0
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 0.0e+00 1108.6 585 94.0
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 9.0e-264 913.3 563 78.7
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 5.0e-262 907.5 564 78.2
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 4.3e-258 894.4 563 77.4
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 5.7e-258 894.0 555 78.0
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 3.8e-254 881.3 556 77.2
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 7.9e-252 873.6 561 77.2
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.1e-240 836.6 572 72.0
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 7.0e-240 833.9 571 72.3
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 1.6e-236 822.8 564 72.9
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 9.1e-232 807.0 566 71.6
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 5.5e-229 797.7 552 72.6
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 3.7e-225 785.0 560 70.5
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.6e-215 753.1 565 66.0
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 2.0e-215 752.7 540 68.0
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 3.5e-215 751.9 575 65.0
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 3.3e-213 745.3 562 65.3
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 5.2e-211 738.0 572 63.6
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 3.2e-208 728.8 563 62.7
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 5.4e-208 728.0 584 63.0
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 2.7e-207 725.7 576 63.4
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 1.7e-206 723.0 561 62.2
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.9e-205 719.5 571 62.0
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.9e-205 719.5 580 62.2
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.9e-205 719.5 579 61.3
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 1.2e-204 716.8 576 62.0
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 8.0e-204 714.1 552 63.8
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.8e-203 713.0 580 61.7
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 5.2e-203 711.4 566 62.2
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.2e-203 711.4 580 61.4
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.5e-202 709.9 524 67.6
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 2.0e-202 709.5 558 62.4
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 7.5e-202 707.6 569 63.1
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 2.4e-200 702.6 573 62.5
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 5.4e-200 701.4 588 60.5
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 1.2e-199 700.3 553 62.4
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 2.1e-199 699.5 571 62.5
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.1e-199 699.5 594 60.3
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 3.9e-198 695.3 562 62.1
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 1.1e-197 693.7 569 60.6
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.5e-197 692.6 553 60.8
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 3.3e-197 692.2 595 59.8
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.3e-197 692.2 570 60.0
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.3e-197 691.0 562 60.1
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.6e-196 689.9 570 60.0
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.1e-195 687.2 563 61.1
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 3.7e-193 678.7 487 66.7
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 1.1e-192 677.2 575 59.7
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 1.1e-192 677.2 553 60.6
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 1.9e-192 676.4 568 59.3
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.4e-192 676.0 573 59.0
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 6.0e-191 671.4 560 60.4
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 7.8e-191 671.0 560 60.0
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 7.8e-191 671.0 560 60.5
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 7.8e-191 671.0 567 59.3
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.3e-190 670.2 562 60.3
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 3.9e-190 668.7 564 59.9
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 8.6e-190 667.5 566 59.2
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 8.6e-190 667.5 568 59.0
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 2.5e-189 666.0 595 56.6
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 5.6e-189 664.8 557 58.5
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 3.1e-187 659.1 555 59.6
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.5e-186 656.8 554 59.6
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 2.0e-186 656.4 579 57.5
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 5.8e-186 654.8 557 59.1
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.3e-185 653.7 609 55.8
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.9e-185 652.5 578 57.1
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.1e-184 650.6 495 64.0
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.9e-184 649.8 558 58.4
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 7.1e-184 647.9 587 56.7
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.3e-182 643.7 536 59.3
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 2.3e-182 642.9 540 59.8
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 3.0e-182 642.5 551 57.5
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 6.6e-182 641.3 586 55.6
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 7.3e-181 637.9 557 56.4
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.6e-180 636.7 583 56.6
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 3.6e-180 635.6 571 56.2
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.2e-178 630.6 503 60.0
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.0e-178 629.8 553 55.7
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.4e-176 623.6 586 54.6
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 4.2e-176 622.1 585 53.8
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 1.6e-175 620.2 470 62.1
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.0e-174 617.5 525 58.1
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 3.0e-174 615.9 481 60.5
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.6e-172 610.1 505 60.8
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 8.1e-172 607.8 631 51.0
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 1.1e-171 607.4 542 55.2
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 6.0e-167 591.7 561 54.2
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.8e-163 580.1 487 56.7
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 9.3e-160 567.8 371 72.5
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 1.5e-157 560.5 571 51.0
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 1.0e-153 547.7 387 66.4
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 1.7e-153 547.0 383 67.1
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.2e-152 542.7 457 61.5
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 3.0e-150 536.2 454 59.9
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.1e-147 527.7 344 70.9
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.4e-147 527.3 390 65.4
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 5.9e-146 521.9 530 52.3
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 7.9e-143 511.5 344 69.5
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 5.7e-141 505.4 381 68.2
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 4.8e-140 502.3 423 57.7
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 6.5e-137 491.9 349 69.1
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 8.5e-137 491.5 552 48.7
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.9e-136 490.3 586 46.6
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 1.7e-129 467.2 548 49.5
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 4.4e-125 452.6 463 50.1
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.3e-124 451.1 343 64.1
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 4.8e-124 449.1 446 48.7
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.0e-122 443.7 421 55.6
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.4e-118 431.0 325 63.4
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 6.8e-118 428.7 321 63.9
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 8.5e-113 411.8 319 61.8
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.0e-110 404.8 498 42.4
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 4.4e-109 399.4 297 63.6
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.3e-108 397.9 297 62.6
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 2.3e-105 387.1 501 42.1
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 8.6e-97 358.6 331 55.0
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.5e-93 347.8 253 65.6
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 6.2e-87 325.9 255 62.0
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 1.8e-86 324.3 245 65.3
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 7.5e-85 318.9 211 70.1
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 3.6e-79 300.1 482 33.6
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.0e-69 267.7 207 59.4
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.5e-61 241.5 161 70.8
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.8e-61 239.6 256 48.4
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.9e-59 234.6 235 51.9
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.3e-57 228.4 145 73.1
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 9.3e-51 205.7 158 57.6
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.2e-50 205.3 137 68.6
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.2e-37 162.2 172 43.0
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.7e-36 158.3 202 47.0
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.9e-35 154.8 113 61.9
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.7e-32 143.3 150 46.0
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 4.1e-30 137.1 82 76.8
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.5e-29 135.2 171 47.4
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 3.8e-28 130.6 162 48.1
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 8.5e-28 129.4 170 47.1
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 2.7e-26 124.4 75 81.3
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 9.7e-24 115.9 146 42.5
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 3.1e-22 110.9 172 41.9
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 9.1e-22 109.4 144 42.4
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.7e-10 70.5 70 47.1
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 2.0e-08 65.1 67 47.8


User provided reference genes

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