Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.6e-41 171.8 96 100.0
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-37 159.5 89 98.9
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 3.6e-35 151.4 89 92.1
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-34 149.8 89 91.0
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.3e-34 148.7 94 86.2
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.6e-33 145.2 88 88.6
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.4e-33 144.8 89 88.8
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.2e-32 142.1 89 86.5
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.9e-32 141.7 89 85.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 6.4e-32 140.6 87 85.1
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 6.4e-32 140.6 89 86.5
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 8.3e-32 140.2 89 85.4
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.4e-31 139.4 87 83.9
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 3.2e-31 138.3 87 85.1
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 4.1e-31 137.9 89 85.4
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 5.4e-31 137.5 89 85.4
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 7.0e-31 137.1 89 82.0
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 2.7e-30 135.2 87 82.8
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 6.0e-30 134.0 89 82.0
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.6e-29 130.6 89 80.9
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.6e-29 130.6 89 80.9
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 6.6e-29 130.6 89 80.9
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 8.6e-29 130.2 85 83.5
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 8.6e-29 130.2 87 83.9
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.5e-28 128.6 87 77.0
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 3.3e-28 128.3 89 75.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.3e-28 128.3 87 77.0
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 4.3e-28 127.9 88 78.4
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 5.6e-28 127.5 87 78.2
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 7.3e-28 127.1 84 79.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 7.3e-28 127.1 87 79.3
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 9.5e-28 126.7 89 77.5
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.2e-27 126.3 87 77.0
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.2e-27 126.3 84 78.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.6e-27 125.9 87 75.9
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.1e-27 125.6 88 78.4
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 2.1e-27 125.6 86 77.9
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.6e-27 124.8 89 76.4
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.6e-27 124.8 89 77.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.7e-27 124.4 87 78.2
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 4.7e-27 124.4 87 78.2
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 6.2e-27 124.0 84 77.4
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 6.2e-27 124.0 88 76.1
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 8.0e-27 123.6 89 75.3
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 8.0e-27 123.6 89 75.3
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 8.0e-27 123.6 89 75.3
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.1e-26 123.2 87 74.7
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-26 123.2 82 78.0
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.1e-26 123.2 74 86.5
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.1e-26 123.2 89 76.4
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.4e-26 122.9 84 77.4
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.4e-26 122.9 87 73.6
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.4e-26 122.9 87 77.0
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.8e-26 122.5 82 78.0
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.8e-26 122.5 89 75.3
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.3e-26 122.1 89 75.3
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.3e-26 122.1 89 75.3
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.1e-26 121.7 85 74.1
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 4.0e-26 121.3 95 73.7
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 4.0e-26 121.3 95 73.7
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 5.2e-26 120.9 84 75.0
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 5.2e-26 120.9 87 74.7
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 5.2e-26 120.9 87 74.7
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 6.8e-26 120.6 89 69.7
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.8e-26 120.6 89 76.4
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 8.9e-26 120.2 87 75.9
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 8.9e-26 120.2 87 74.7
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.2e-25 119.8 90 74.4
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.0e-25 119.0 85 74.1
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.0e-25 119.0 87 72.4
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.0e-25 119.0 89 74.2
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 3.4e-25 118.2 90 73.3
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.4e-25 117.9 85 74.1
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 5.8e-25 117.5 89 73.0
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.8e-25 117.5 84 73.8
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.7e-24 115.9 73 82.2
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.2e-24 115.5 84 75.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 3.7e-24 114.8 87 66.7
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 3.7e-24 114.8 88 72.7
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.9e-24 114.4 86 73.3
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.9e-24 114.4 86 73.3
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 6.4e-24 114.0 84 71.4
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 8.3e-24 113.6 86 73.3
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 8.3e-24 113.6 79 74.7
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 8.3e-24 113.6 87 70.1
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.9e-23 112.5 69 82.6
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.9e-23 112.5 89 69.7
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 3.2e-23 111.7 74 77.0
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 4.1e-23 111.3 87 71.3
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 4.1e-23 111.3 87 71.3
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.1e-23 111.3 88 69.3
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 4.1e-23 111.3 80 68.8
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 5.4e-23 110.9 68 82.4
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.4e-23 110.9 68 82.4
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.4e-23 110.9 68 82.4
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.4e-23 110.9 68 82.4
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.4e-23 110.9 68 82.4
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 5.4e-23 110.9 68 82.4
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 5.4e-23 110.9 88 69.3
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.2e-22 109.8 84 67.9
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.2e-22 109.8 84 70.2
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.2e-22 109.8 84 70.2
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.6e-22 109.4 85 69.4
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.6e-22 109.4 87 70.1
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.1e-22 109.0 84 67.9
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.1e-22 109.0 84 67.9
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.5e-22 108.2 84 67.9
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.5e-22 108.2 87 70.1
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 4.6e-22 107.8 73 76.7
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.6e-22 107.8 87 69.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 4.6e-22 107.8 88 68.2
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.0e-21 106.7 69 76.8
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.7e-21 105.9 85 69.4
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.7e-21 105.9 89 67.4
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.7e-21 105.9 84 66.7
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.3e-21 105.5 83 66.3
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.5e-20 102.1 88 64.8
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 3.3e-20 101.7 88 64.8
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 4.3e-20 101.3 93 61.3
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.2e-19 99.8 86 61.6
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 6.2e-19 97.4 77 63.6
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 3.1e-18 95.1 65 73.8
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.0e-18 94.7 82 64.6
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 5.2e-18 94.4 87 57.5
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 2.9e-16 88.6 89 59.6
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.2e-14 83.2 72 61.1
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-13 79.0 45 93.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 3.0e-13 78.6 71 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 6.6e-13 77.4 89 50.6
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 1.5e-12 76.3 50 82.0
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 7.3e-12 73.9 58 63.8
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.5e-09 66.2 69 56.5
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 4.4e-09 64.7 39 84.6
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 4.4e-09 64.7 48 75.0
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 5.8e-09 64.3 38 84.2
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 7.6e-09 63.9 38 84.2
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 9.9e-09 63.5 56 60.7
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.2e-08 62.4 44 72.7
arahy.Tifrunner.gnm1.ann1.LX64UG Arachis hypogaea HOM05D000103 ORTHO05D084991 4.9e-08 61.2 44 70.5
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 6.4e-08 60.8 52 63.5
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 8.4e-08 60.5 35 85.7
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 8.4e-08 60.5 45 57.8
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.1e-07 60.1 37 78.4
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-06 56.6 34 82.4
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-06 56.2 38 76.3
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.0e-06 54.3 36 77.8
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 6.0e-06 54.3 44 65.9
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 7.8e-06 53.9 38 73.7


User provided reference genes

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