Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 2.8e-117 425.2 211 100.0
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 2.9e-85 318.9 205 81.0
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 2.9e-85 318.9 205 81.0
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 4.7e-80 301.6 205 75.6
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.4e-79 300.1 205 75.1
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 8.9e-79 297.4 205 75.1
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 1.3e-77 293.5 204 73.0
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 2.9e-77 292.4 204 73.5
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.8e-77 292.0 205 71.7
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 8.4e-77 290.8 204 72.5
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.9e-76 289.7 204 73.0
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 1.9e-76 289.7 205 72.7
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 3.0e-74 282.3 205 70.7
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.1e-73 280.4 205 69.8
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 1.9e-73 279.6 205 69.3
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.5e-73 279.3 205 69.3
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 4.3e-73 278.5 202 70.8
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 4.3e-73 278.5 205 70.2
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 4.3e-73 278.5 205 68.8
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 4.3e-73 278.5 205 69.8
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 7.3e-73 277.7 204 70.1
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 1.6e-72 276.6 205 69.8
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 2.1e-72 276.2 205 69.8
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 2.1e-72 276.2 205 69.3
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 4.8e-72 275.0 205 69.3
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 2.4e-71 272.7 210 65.2
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 2.4e-71 272.7 205 68.8
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 3.1e-71 272.3 205 68.3
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 3.1e-71 272.3 209 68.4
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 3.1e-71 272.3 205 68.3
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 5.3e-71 271.6 205 68.3
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 5.3e-71 271.6 205 68.3
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 5.3e-71 271.6 204 68.6
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 6.9e-71 271.2 205 67.8
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 6.9e-71 271.2 205 68.3
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 9.0e-71 270.8 205 68.3
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 9.0e-71 270.8 205 68.3
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 9.0e-71 270.8 205 68.3
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 1.2e-70 270.4 202 69.8
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 1.2e-70 270.4 205 66.8
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 1.2e-70 270.4 205 68.3
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.2e-70 270.4 205 67.3
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 2.0e-70 269.6 205 67.8
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.0e-70 269.6 202 69.8
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 2.6e-70 269.2 202 69.8
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 3.4e-70 268.9 202 66.8
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 5.8e-70 268.1 205 66.8
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 7.6e-70 267.7 204 67.2
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 7.6e-70 267.7 204 66.2
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 9.9e-70 267.3 203 67.0
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.3e-69 266.9 211 66.4
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 2.2e-69 266.2 205 66.3
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 2.2e-69 266.2 204 66.7
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 2.2e-69 266.2 205 66.3
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 2.9e-69 265.8 204 66.2
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 6.4e-69 264.6 205 65.9
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 6.4e-69 264.6 205 65.9
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 8.4e-69 264.2 205 66.8
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.1e-68 263.8 204 66.7
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.4e-68 263.5 205 66.3
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 3.2e-68 262.3 204 65.7
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 3.2e-68 262.3 204 65.7
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 3.2e-68 262.3 205 63.9
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.2e-68 262.3 202 65.8
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 3.2e-68 262.3 206 65.5
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 4.2e-68 261.9 205 65.4
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 4.2e-68 261.9 204 65.7
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 5.4e-68 261.5 204 66.2
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 7.1e-68 261.2 204 64.2
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 7.1e-68 261.2 205 65.9
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 7.1e-68 261.2 202 65.3
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 3.5e-67 258.8 202 65.8
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.5e-67 258.8 208 65.4
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 7.9e-67 257.7 204 64.2
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 1.3e-66 256.9 225 61.8
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 2.3e-66 256.1 204 64.2
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 2.3e-66 256.1 204 64.2
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 5.1e-66 255.0 203 63.5
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 1.9e-65 253.1 203 63.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 9.6e-65 250.8 204 63.7
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 8.1e-64 247.7 239 57.7
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.8e-63 246.5 205 62.0
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 5.3e-63 245.0 204 61.8
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 2.9e-61 239.2 203 61.1
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 1.4e-60 236.9 204 59.3
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.6e-59 233.4 205 59.5
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 5.1e-58 228.4 183 66.1
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.9e-57 226.5 204 58.8
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 5.6e-57 224.9 222 53.6
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.4e-57 224.6 202 55.4
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.4e-57 224.6 202 55.4
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 9.6e-57 224.2 202 56.4
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 6.9e-55 218.0 202 52.5
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 7.6e-54 214.5 202 58.9
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.3e-53 213.8 139 74.1
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 4.9e-53 211.8 162 72.2
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 1.3e-48 197.2 207 54.6
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 1.6e-48 196.8 200 59.5
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.8e-47 193.4 205 52.7
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.5e-46 190.3 171 60.8
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 7.6e-46 188.0 202 45.5
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 1.4e-44 183.7 161 62.1
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 5.7e-41 171.8 200 43.0
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.3e-37 160.6 207 44.4
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.2e-36 155.6 181 53.0
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 7.2e-36 154.8 188 44.1
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 1.0e-29 134.4 202 37.1
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 5.0e-29 132.1 91 67.0
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.4e-28 130.6 91 65.9
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 9.4e-28 127.9 135 54.1
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 6.1e-27 125.2 206 41.3
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 8.8e-26 121.3 195 43.1
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 5.0e-21 105.5 156 44.2
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 5.7e-17 92.0 205 35.6
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 5.7e-17 92.0 74 63.5
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 6.3e-16 88.6 44 86.4
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 6.3e-16 88.6 44 86.4
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.8e-15 87.0 71 62.0
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 5.9e-14 82.0 87 52.9
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.8e-13 79.3 136 33.8
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 1.2e-11 74.3 48 77.1
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.2e-09 67.8 71 54.9
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.2e-09 67.8 56 62.5
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.2e-06 57.8 42 69.0


User provided reference genes

Program Settings