Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 4.7e-177 624.4 311 100.0
arahy.Tifrunner.gnm1.ann1.P4ZX1L Arachis hypogaea HOM05D001645 ORTHO05D084642 3.4e-66 256.1 338 50.3
arahy.Tifrunner.gnm1.ann1.8GV2HY Arachis hypogaea HOM05D001645 ORTHO05D085498 5.7e-66 255.4 239 63.2
arahy.Tifrunner.gnm1.ann1.9V0GTC Arachis hypogaea HOM05D001645 ORTHO05D084338 2.0e-50 203.8 138 77.5
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.1e-24 118.2 62 91.9
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.1e-24 118.2 62 91.9
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.5e-21 107.8 59 84.7
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 1.5e-21 107.8 59 84.7
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.5e-21 107.8 59 84.7
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 1.5e-21 107.8 59 84.7
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 2.5e-21 107.1 59 83.1
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 2.5e-21 107.1 59 83.1
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 3.3e-21 106.7 59 83.1
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 5.6e-21 105.9 59 81.4
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 5.6e-21 105.9 59 83.1
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 2.1e-20 104.0 59 81.4
arahy.Tifrunner.gnm1.ann1.0CNS1F Arachis hypogaea HOM05D005348 ORTHO05D007393 4.8e-20 102.8 54 96.3
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 6.2e-20 102.4 62 74.2
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 8.1e-20 102.1 59 79.7
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 1.4e-19 101.3 88 59.1
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 1.4e-19 101.3 59 74.6
arahy.Tifrunner.gnm1.ann1.8CPX3B Arachis hypogaea HOM05D002734 ORTHO05D003035 2.4e-19 100.5 55 89.1
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 2.4e-19 100.5 66 71.2
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 2.4e-19 100.5 59 74.6
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 3.1e-19 100.1 59 78.0
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 3.1e-19 100.1 59 76.3
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 3.1e-19 100.1 59 78.0
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 4.0e-19 99.8 59 76.3
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 5.3e-19 99.4 59 78.0
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 6.9e-19 99.0 59 74.6
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 6.9e-19 99.0 62 74.2
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 6.9e-19 99.0 59 74.6
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 9.0e-19 98.6 62 72.6
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 9.0e-19 98.6 59 76.3
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 9.0e-19 98.6 59 74.6
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.0e-19 98.6 59 74.6
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 9.0e-19 98.6 59 72.9
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 9.0e-19 98.6 59 74.6
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 1.2e-18 98.2 59 74.6
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.2e-18 98.2 59 72.9
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 1.2e-18 98.2 66 66.7
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.5e-18 97.8 62 69.4
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.5e-18 97.8 59 76.3
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 1.5e-18 97.8 62 72.6
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 1.5e-18 97.8 59 74.6
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 2.0e-18 97.4 59 72.9
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 2.0e-18 97.4 59 72.9
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 2.0e-18 97.4 59 72.9
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 2.6e-18 97.1 59 74.6
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 2.6e-18 97.1 59 72.9
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 2.6e-18 97.1 59 74.6
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 2.6e-18 97.1 59 76.3
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 3.4e-18 96.7 62 67.7
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 3.4e-18 96.7 59 71.2
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 4.5e-18 96.3 59 72.9
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 4.5e-18 96.3 62 67.7
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 5.8e-18 95.9 62 69.4
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 5.8e-18 95.9 62 71.0
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 5.8e-18 95.9 62 71.0
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 5.8e-18 95.9 59 72.9
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 5.8e-18 95.9 58 75.9
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 7.6e-18 95.5 62 67.7
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 7.6e-18 95.5 59 72.9
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 9.9e-18 95.1 59 72.9
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 9.9e-18 95.1 59 72.9
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 9.9e-18 95.1 62 66.1
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 9.9e-18 95.1 62 67.7
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 9.9e-18 95.1 59 72.9
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 1.3e-17 94.7 59 69.5
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 1.3e-17 94.7 62 69.4
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 1.3e-17 94.7 62 69.4
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.3e-17 94.7 59 71.2
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 2.2e-17 94.0 58 72.4
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.2e-17 94.0 63 68.3
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 2.9e-17 93.6 59 71.2
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 2.9e-17 93.6 62 71.0
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 8.4e-17 92.0 59 69.5
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 1.1e-16 91.7 59 64.4
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 1.9e-16 90.9 66 65.2
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 4.2e-16 89.7 59 67.8
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 5.5e-16 89.4 59 64.4
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 5.5e-16 89.4 59 62.7
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 9.3e-16 88.6 59 62.7
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 1.2e-15 88.2 62 64.5
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.1e-15 87.4 59 61.0
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 2.1e-15 87.4 59 61.0
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 3.5e-15 86.7 58 67.2
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 3.5e-15 86.7 92 48.9
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.0e-14 85.1 62 59.7
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.0e-14 85.1 62 59.7
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.0e-14 85.1 62 59.7
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 1.0e-14 85.1 84 52.4
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.3e-14 84.7 58 62.1
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.0e-14 83.6 62 58.1
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 1.5e-13 81.3 62 56.5
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.9e-13 80.9 86 48.8
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.9e-13 80.9 86 48.8
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 8.1e-12 75.5 40 85.0
arahy.Tifrunner.gnm1.ann1.DLN685 Arachis hypogaea HOM05D007935 ORTHO05D007393 2.6e-10 70.5 38 94.7
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 2.6e-10 70.5 64 56.2
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.2e-07 61.6 59 54.2
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 7.9e-07 58.9 59 55.9
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 5.1e-06 56.2 30 86.7


User provided reference genes

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