Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 5.7e-209 730.7 381 100.0
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 7.0e-191 670.6 394 91.6
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 9.5e-164 580.5 377 79.8
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 2.4e-162 575.9 377 79.6
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 5.8e-161 571.2 377 78.5
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.9e-159 566.2 377 78.0
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 9.2e-159 563.9 373 78.8
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 6.6e-157 557.8 377 76.4
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.4e-151 540.0 378 75.7
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 2.0e-145 519.6 414 68.6
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 5.8e-145 518.1 354 75.7
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 4.9e-144 515.0 376 71.0
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 2.1e-139 499.6 370 70.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 3.1e-138 495.7 370 69.5
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.0e-137 493.0 424 63.7
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 2.0e-137 493.0 374 69.3
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 4.5e-137 491.9 370 69.2
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 9.9e-137 490.7 414 63.8
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.2e-136 489.6 373 67.8
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 2.9e-136 489.2 370 69.7
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.4e-135 486.9 391 67.5
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 4.2e-135 485.3 370 68.1
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 1.5e-132 476.9 402 64.7
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 5.6e-132 474.9 368 65.5
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 7.4e-132 474.6 374 67.4
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 9.6e-132 474.2 375 66.9
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 9.6e-132 474.2 370 67.3
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-131 473.4 374 67.1
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.6e-131 473.4 374 67.1
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 2.1e-131 473.0 370 67.3
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 3.1e-130 469.2 368 65.8
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 6.9e-130 468.0 374 66.0
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 6.9e-130 468.0 370 65.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 2.0e-129 466.5 374 65.2
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.6e-129 466.1 375 66.4
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 3.4e-129 465.7 355 68.7
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 7.6e-129 464.5 370 65.4
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 7.6e-129 464.5 358 67.0
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 8.4e-128 461.1 371 67.9
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 2.5e-127 459.5 467 55.9
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 4.2e-127 458.8 369 64.8
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.2e-126 457.2 374 64.2
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.1e-126 456.4 377 66.3
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 7.9e-126 454.5 386 63.5
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.3e-125 453.8 420 60.2
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 4.3e-124 448.7 392 61.5
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.3e-124 448.7 321 73.5
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 7.4e-124 448.0 417 58.5
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 2.2e-123 446.4 417 58.5
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 4.8e-123 445.3 417 60.9
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 4.8e-123 445.3 416 58.9
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 6.3e-123 444.9 427 58.1
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 8.2e-123 444.5 369 62.6
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.8e-122 443.4 395 61.0
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 2.4e-122 443.0 368 62.8
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 2.4e-122 443.0 414 58.2
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.5e-121 440.3 387 61.0
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.5e-121 440.3 414 58.0
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 2.0e-121 439.9 372 63.4
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 2.6e-121 439.5 356 64.9
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 4.5e-121 438.7 354 65.8
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 1.0e-120 437.6 414 59.4
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.0e-120 435.3 354 64.4
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 5.0e-120 435.3 376 62.5
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 3.2e-119 432.6 425 55.5
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 9.4e-119 431.0 370 61.6
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 2.1e-118 429.9 410 58.0
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 2.7e-118 429.5 423 57.0
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 4.6e-118 428.7 423 56.7
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 4.6e-118 428.7 422 55.5
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 6.1e-118 428.3 422 57.1
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 7.9e-118 427.9 420 58.1
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.0e-117 427.6 371 62.5
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 1.4e-117 427.2 423 56.0
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 1.4e-117 427.2 393 58.5
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 1.4e-117 427.2 369 60.4
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 3.0e-117 426.0 407 57.2
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 3.9e-117 425.6 423 56.7
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.1e-116 424.1 334 65.6
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 3.7e-115 419.1 366 60.4
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 3.7e-115 419.1 366 60.4
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 3.7e-115 419.1 434 54.8
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 6.3e-115 418.3 423 54.6
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.1e-114 417.5 354 63.3
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 9.1e-114 414.5 309 68.9
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.2e-113 414.1 459 53.2
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 5.9e-113 411.8 373 60.3
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 5.9e-113 411.8 314 65.3
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.3e-112 410.6 378 58.5
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 2.5e-111 406.4 370 58.1
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.1e-110 403.3 384 58.3
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 7.9e-110 401.4 372 57.3
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 2.0e-108 396.7 379 58.0
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.7e-107 393.7 411 54.3
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 5.3e-106 388.7 375 58.1
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 9.1e-106 387.9 368 58.4
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 6.5e-104 381.7 376 56.1
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.4e-103 380.6 368 56.2
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 2.3e-101 373.2 306 63.7
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 2.3e-101 373.2 306 63.7
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 5.2e-101 372.1 366 55.2
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.0e-100 370.2 353 57.5
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.6e-100 369.8 353 57.8
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.3e-100 369.4 353 57.5
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.2e-99 366.7 353 57.2
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.8e-99 366.3 353 57.2
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.2e-96 356.7 374 52.4
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 3.8e-96 355.9 373 52.5
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 3.8e-96 355.9 323 56.3
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.7e-89 333.2 279 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 2.3e-85 320.1 418 45.7
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 7.7e-81 305.1 335 51.0
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.5e-79 298.9 374 49.2
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 2.0e-76 290.4 225 67.1
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.7e-73 280.0 246 61.4
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.4e-69 267.7 226 62.8
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.3e-64 250.4 227 57.7
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 1.5e-52 211.1 406 35.0
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 2.0e-52 210.7 153 69.9
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 9.2e-50 201.8 264 46.6
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.5e-47 194.5 159 61.6
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.9e-47 194.1 144 71.5
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.1e-45 186.8 128 71.9
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 7.1e-42 175.6 126 71.4
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.1e-40 169.5 115 74.8
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 8.7e-40 168.7 131 62.6
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 3.3e-23 113.6 78 71.8
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.2e-20 105.1 150 45.3
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 2.2e-19 100.9 71 69.0
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.4e-13 81.6 351 22.2
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 5.3e-13 79.7 49 83.7
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 5.8e-12 76.3 66 62.1
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 1.7e-11 74.7 56 67.9
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 8.7e-08 62.4 65 58.5


User provided reference genes

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