Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 8.3e-109 397.1 212 100.0
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-52 210.3 123 93.5
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 3.0e-50 202.6 123 91.1
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 9.4e-44 181.0 112 89.3
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.0e-42 177.6 162 67.3
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 5.0e-37 158.7 171 60.2
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 5.2e-34 148.7 133 66.9
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.6e-30 137.1 138 63.8
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 2.0e-30 136.7 86 82.6
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 2.7e-30 136.3 86 82.6
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 3.5e-30 136.0 118 67.8
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 4.5e-30 135.6 126 62.7
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 4.5e-30 135.6 169 51.5
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.7e-29 133.7 119 68.9
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.7e-29 133.7 121 66.1
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 7.2e-28 128.3 120 66.7
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 1.4e-26 124.0 130 62.3
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 7.0e-23 111.7 134 56.7
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.2e-22 110.9 86 67.4
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.6e-22 110.5 86 69.8
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.6e-22 110.5 96 65.6
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 4.5e-22 109.0 84 70.2
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 4.5e-22 109.0 98 63.3
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 5.9e-22 108.6 86 66.3
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 7.7e-22 108.2 85 67.1
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.0e-21 107.8 86 66.3
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.3e-21 107.5 77 74.0
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.7e-21 107.1 86 64.0
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.9e-21 106.3 85 65.9
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.9e-21 106.3 85 65.9
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 2.9e-21 106.3 86 65.1
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.9e-21 106.3 83 67.5
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.8e-21 105.9 118 56.8
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 6.5e-21 105.1 83 63.9
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 6.5e-21 105.1 78 71.8
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 8.5e-21 104.8 118 56.8
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 8.5e-21 104.8 74 74.3
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.1e-20 104.4 86 62.8
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 1.1e-20 104.4 86 67.4
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.9e-20 103.6 76 72.4
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 2.5e-20 103.2 86 66.3
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 3.2e-20 102.8 74 70.3
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 3.2e-20 102.8 98 63.3
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 4.2e-20 102.4 85 67.1
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.5e-20 102.1 85 65.9
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 7.2e-20 101.7 97 59.8
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 7.2e-20 101.7 86 65.1
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 7.2e-20 101.7 96 64.6
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.2e-19 100.9 79 68.4
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.2e-19 100.9 86 61.6
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.6e-19 100.5 101 58.4
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.7e-19 99.8 98 62.2
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.7e-19 99.8 86 66.3
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.7e-19 99.8 68 75.0
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.7e-19 99.8 83 66.3
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.7e-19 99.8 83 63.9
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.6e-19 99.4 86 65.1
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 3.6e-19 99.4 96 59.4
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 3.6e-19 99.4 78 69.2
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 3.6e-19 99.4 136 51.5
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 6.1e-19 98.6 86 65.1
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 8.0e-19 98.2 76 67.1
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 8.0e-19 98.2 85 65.9
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.0e-18 97.8 121 54.5
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.0e-18 97.8 86 60.5
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.0e-18 97.8 79 67.1
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.4e-18 97.4 99 56.6
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.8e-18 97.1 83 63.9
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.8e-18 97.1 86 59.3
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.8e-18 97.1 136 47.1
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.3e-18 96.7 85 57.6
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 3.0e-18 96.3 86 65.1
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 3.0e-18 96.3 74 63.5
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.0e-18 96.3 125 50.4
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.0e-18 96.3 125 52.8
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 4.0e-18 95.9 86 59.3
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.0e-18 95.9 124 50.8
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 4.0e-18 95.9 82 62.2
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 5.2e-18 95.5 130 50.0
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 6.8e-18 95.1 108 53.7
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 6.8e-18 95.1 84 57.1
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 8.8e-18 94.7 73 67.1
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 8.8e-18 94.7 88 62.5
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 8.8e-18 94.7 88 62.5
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.2e-17 94.4 108 53.7
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.2e-17 94.4 77 59.7
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.2e-17 94.4 77 59.7
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.5e-17 94.0 82 64.6
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.5e-17 94.0 68 73.5
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.0e-17 93.6 127 48.8
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 7.5e-17 91.7 74 66.2
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 9.8e-17 91.3 71 66.2
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.3e-16 90.9 86 59.3
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.7e-16 90.5 73 67.1
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 2.2e-16 90.1 86 61.6
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 4.9e-16 89.0 128 47.7
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 6.3e-16 88.6 76 64.5
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 8.3e-16 88.2 97 56.7
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.1e-15 87.8 82 61.0
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.1e-15 87.8 84 58.3
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 2.4e-15 86.7 123 50.4
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.4e-15 86.7 127 47.2
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.1e-15 86.3 73 63.0
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.1e-15 86.3 94 56.4
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 4.1e-15 85.9 124 47.6
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 4.1e-15 85.9 170 40.6
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 5.4e-15 85.5 98 54.1
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 5.4e-15 85.5 98 54.1
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 5.4e-15 85.5 98 54.1
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 5.4e-15 85.5 137 49.6
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 7.0e-15 85.1 79 57.0
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 9.2e-15 84.7 79 62.0
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 9.2e-15 84.7 68 66.2
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 9.2e-15 84.7 68 66.2
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.2e-14 84.3 123 47.2
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.0e-14 83.6 83 54.2
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 2.7e-14 83.2 116 50.9
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 2.7e-14 83.2 59 71.2
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 4.5e-14 82.4 92 52.2
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 5.9e-14 82.0 68 64.7
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 5.9e-14 82.0 68 64.7
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 5.9e-14 82.0 68 64.7
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 5.9e-14 82.0 130 46.2
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 7.7e-14 81.6 68 63.2
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.7e-13 80.5 63 66.7
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.7e-13 80.5 123 45.5
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 3.8e-13 79.3 86 55.8
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 6.6e-13 78.6 68 63.2
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 6.6e-13 78.6 68 63.2
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 6.6e-13 78.6 68 63.2
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 8.6e-13 78.2 134 46.3
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 9.5e-12 74.7 58 70.7
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.1e-11 73.6 77 58.4
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 2.1e-11 73.6 126 42.9
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 2.1e-11 73.6 126 42.9
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.8e-11 73.2 57 68.4
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 4.7e-11 72.4 126 42.9
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 6.8e-10 68.6 106 47.2
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 6.8e-10 68.6 115 44.3
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.5e-09 67.4 64 59.4
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 4.4e-09 65.9 65 63.1
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 7.5e-09 65.1 87 51.7
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 9.8e-09 64.7 121 39.7
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.9e-08 63.2 141 40.4
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 1.1e-07 61.2 111 42.3
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.4e-07 60.8 74 50.0
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.2e-07 59.7 47 63.8
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 5.4e-07 58.9 97 46.4


User provided reference genes

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