Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 0.0e+00 1091.6 730 100.0
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 3.9e-283 978.0 776 87.5
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 2.3e-118 430.6 536 72.6
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.8e-117 426.0 536 72.0
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.7e-113 414.5 551 67.2
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 2.1e-111 407.5 535 74.0
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 4.7e-111 406.4 538 72.1
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 2.7e-106 390.6 536 67.7
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.1e-105 386.3 536 75.9
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 8.6e-105 385.6 535 72.3
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 4.0e-102 376.7 545 60.4
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.5e-101 374.8 585 65.5
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 4.4e-101 373.2 541 70.6
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 7.6e-101 372.5 548 68.2
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 8.4e-100 369.0 544 63.4
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.3e-97 361.7 546 67.4
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.5e-96 358.2 543 64.8
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 3.6e-95 353.6 582 59.8
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.4e-94 351.7 544 64.7
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.3e-92 345.1 548 67.9
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 4.9e-92 343.2 543 62.1
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 3.2e-91 340.5 571 64.8
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 7.1e-91 339.3 571 64.6
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 9.3e-91 339.0 545 68.8
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.2e-90 338.6 540 71.3
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 3.5e-90 337.0 545 63.7
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 4.6e-90 336.7 551 62.8
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 2.3e-89 334.3 570 64.2
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.3e-89 334.3 579 62.9
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.5e-88 331.6 544 63.8
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 9.6e-88 328.9 557 57.5
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.6e-87 328.2 529 68.1
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 4.8e-87 326.6 585 48.2
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.4e-86 324.3 569 62.4
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 2.4e-86 324.3 561 60.6
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 3.1e-86 323.9 559 69.8
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 9.0e-86 322.4 546 62.6
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.9e-84 317.4 536 66.2
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.9e-83 314.7 548 60.6
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 7.1e-83 312.8 547 68.7
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 7.1e-83 312.8 527 69.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.3e-81 308.5 444 63.3
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 2.3e-81 307.8 527 58.3
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 3.0e-81 307.4 546 66.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 5.1e-81 306.6 590 54.9
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.5e-80 305.1 527 68.3
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.7e-79 300.4 464 66.2
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 4.8e-79 300.1 548 56.6
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 6.2e-79 299.7 570 58.8
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.8e-78 298.1 549 59.9
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 2.4e-78 297.7 191 82.2
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 3.1e-78 297.4 570 59.8
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 3.4e-77 293.9 543 65.4
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 7.6e-77 292.7 552 61.4
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 7.6e-77 292.7 574 61.0
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 2.2e-76 291.2 553 54.6
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.9e-76 290.8 506 58.5
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 6.4e-76 289.7 547 64.4
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.1e-75 288.9 455 71.6
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.4e-75 288.5 595 58.3
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.4e-75 288.5 544 58.8
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.9e-75 288.1 181 84.0
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.5e-75 287.7 504 54.0
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 5.5e-75 286.6 552 64.7
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 5.5e-75 286.6 173 87.3
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 5.5e-75 286.6 174 82.2
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 5.5e-75 286.6 536 63.1
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.2e-74 285.4 584 55.8
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 2.1e-74 284.6 461 69.8
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 2.1e-74 284.6 555 48.6
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 2.1e-74 284.6 452 74.6
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.7e-74 284.3 551 62.3
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 6.0e-74 283.1 553 55.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 6.0e-74 283.1 555 63.1
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.0e-73 282.3 468 59.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 5.1e-73 280.0 508 57.9
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 6.7e-73 279.6 428 69.6
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 6.7e-73 279.6 175 83.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 5.6e-72 276.6 546 61.4
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 9.6e-72 275.8 160 86.2
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.8e-71 273.5 583 55.1
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 6.2e-71 273.1 536 65.3
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.8e-70 271.6 538 60.2
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 6.9e-70 269.6 447 63.5
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 9.0e-70 269.2 558 57.3
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-69 268.5 462 61.9
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.5e-69 268.5 452 68.1
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 2.6e-69 267.7 551 50.6
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.4e-69 267.3 172 83.1
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.4e-69 267.3 557 52.4
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 5.8e-69 266.5 556 49.5
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 5.8e-69 266.5 163 82.8
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 7.6e-69 266.2 178 78.7
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.9e-68 264.2 185 75.7
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.8e-68 263.8 188 73.9
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.4e-67 261.9 506 62.6
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.9e-67 261.5 532 50.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.9e-67 261.5 553 56.1
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.5e-67 261.2 184 75.0
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.7e-66 257.7 466 64.8
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.7e-66 257.7 464 67.0
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 3.5e-66 257.3 163 80.4
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 6.1e-66 256.5 578 57.1
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.3e-65 255.4 460 67.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 1.3e-65 255.4 583 55.2
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.3e-65 255.4 186 72.6
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.0e-65 254.2 185 73.0
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 8.7e-65 252.7 175 77.1
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.1e-64 252.3 144 88.2
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 2.5e-64 251.1 463 66.3
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 7.4e-64 249.6 545 61.1
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 9.7e-64 249.2 185 71.9
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 9.7e-64 249.2 463 64.4
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 2.2e-63 248.1 178 73.0
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 6.3e-63 246.5 174 73.6
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 2.4e-62 244.6 461 56.6
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-61 242.3 458 57.2
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.2e-61 242.3 494 50.4
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.6e-61 241.1 461 57.7
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-60 238.0 157 77.1
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-59 235.3 460 53.7
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-58 232.3 459 55.1
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-58 232.3 160 74.4
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.2e-58 232.3 554 50.4
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-58 231.9 134 84.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-58 230.7 133 85.0
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-58 230.7 200 64.0
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 3.6e-58 230.7 463 51.2
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 5.1e-57 226.9 458 57.0
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 6.7e-57 226.5 133 83.5
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-56 225.3 181 70.7
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.5e-56 225.3 144 81.9
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 5.7e-56 223.4 131 87.0
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 7.4e-56 223.0 130 83.8
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-55 220.3 133 81.2
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-55 220.3 130 83.1
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 8.2e-55 219.5 175 70.9
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-54 217.2 178 68.0
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-53 215.7 174 70.7
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-53 215.7 174 70.7
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 7.7e-53 213.0 458 36.7
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.3e-52 212.2 178 66.3
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 7.2e-51 206.5 478 47.7
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 9.4e-51 206.1 138 80.4
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 5.3e-46 190.3 176 61.4
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.1e-43 182.6 158 63.3
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.9e-43 181.8 99 91.9
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-42 177.6 124 76.6
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-40 172.2 137 67.9
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.7e-39 168.7 130 73.8
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 8.2e-39 166.4 106 79.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-37 162.5 104 76.0
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.6e-37 161.4 476 56.7
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.2e-36 158.3 92 83.7
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 4.7e-34 150.6 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.5e-32 145.6 136 58.1
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.4e-30 138.3 85 78.8
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.6e-29 135.6 85 77.6
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.6e-29 135.6 71 94.4
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 4.5e-29 134.0 176 49.4
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.2e-28 131.7 103 58.3
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 6.1e-26 123.6 86 69.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-25 122.1 86 68.6
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 2.3e-25 121.7 199 45.2
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-21 109.0 69 76.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.6e-21 109.0 65 81.5
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-21 108.6 65 81.5
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.3e-19 101.3 188 39.9
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 5.5e-19 100.5 96 58.3
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-18 98.6 69 72.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 2.1e-18 98.6 52 92.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 3.0e-17 94.7 154 42.2
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 3.4e-16 91.3 163 42.3
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 4.6e-13 80.9 111 50.5
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 1.0e-12 79.7 93 54.8
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-11 75.5 82 58.5
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 2.3e-09 68.6 64 59.4
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 1.5e-08 65.9 55 60.0
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.7e-07 61.2 52 59.6


User provided reference genes

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