Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.3e-48 193.7 96 100.0
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 6.3e-48 193.7 96 100.0
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 6.0e-22 107.5 97 64.9
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.3e-18 95.5 96 57.3
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.1e-18 95.1 96 56.2
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 6.8e-18 94.0 98 52.0
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.6e-17 92.0 96 52.1
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.7e-16 89.4 96 56.2
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.1e-15 86.7 96 54.2
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 2.1e-14 82.4 98 51.0
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.3e-13 79.7 100 50.0
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 4.3e-12 74.7 101 49.5
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 9.6e-12 73.6 98 50.0
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.6e-11 72.8 91 46.2
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 3.6e-11 71.6 88 51.1
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 6.2e-11 70.9 96 49.0
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 8.1e-11 70.5 100 48.0
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.4e-10 69.7 104 47.1
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.8e-10 69.3 92 44.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.8e-10 69.3 86 44.2
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-10 68.9 92 47.8
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.1e-10 68.6 92 50.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 3.1e-10 68.6 92 45.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.1e-10 68.6 91 46.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 3.1e-10 68.6 90 46.7
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 5.2e-10 67.8 90 47.8
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.2e-10 67.8 101 44.6
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.8e-10 67.4 102 47.1
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.8e-10 67.4 93 47.3
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.8e-10 67.4 93 46.2
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.9e-10 67.0 93 52.7
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.2e-09 66.6 94 50.0
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.5e-09 66.2 91 47.3
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 2.6e-09 65.5 91 50.5
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.6e-09 65.5 102 42.2
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.6e-09 65.5 97 40.2
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.6e-09 65.5 93 45.2
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.6e-09 65.5 92 43.5
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 3.4e-09 65.1 94 43.6
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.4e-09 64.7 101 42.6
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 5.8e-09 64.3 96 44.8
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 5.8e-09 64.3 85 45.9
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 7.6e-09 63.9 92 44.6
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 7.6e-09 63.9 93 50.5
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 9.9e-09 63.5 91 45.1
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.3e-08 63.2 95 41.1
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.3e-08 63.2 95 41.1
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.3e-08 63.2 74 48.6
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.7e-08 62.8 85 45.9
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.7e-08 62.8 85 45.9
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.7e-08 62.8 95 42.1
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.7e-08 62.8 87 42.5
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.7e-08 62.8 93 48.4
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 1.7e-08 62.8 90 46.7
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.2e-08 62.4 92 45.7
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.2e-08 62.4 94 42.6
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.2e-08 62.4 106 42.5
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.9e-08 62.0 93 43.0
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.9e-08 62.0 93 46.2
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.9e-08 62.0 83 41.0
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.9e-08 62.0 92 44.6
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.9e-08 62.0 93 41.9
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.8e-08 61.6 99 43.4
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 3.8e-08 61.6 92 45.7
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 4.9e-08 61.2 91 45.1
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.9e-08 61.2 83 45.8
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.9e-08 61.2 92 43.5
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 4.9e-08 61.2 91 45.1
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 4.9e-08 61.2 94 41.5
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 6.4e-08 60.8 96 44.8
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.4e-08 60.5 96 43.8
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 8.4e-08 60.5 86 41.9
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 8.4e-08 60.5 90 44.4
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 8.4e-08 60.5 90 45.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 8.4e-08 60.5 56 51.8
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 43 67.4
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 105 37.1
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-07 60.1 99 44.4
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 1.1e-07 60.1 84 42.9
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 82 42.7
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.4e-07 59.7 92 44.6
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 83 45.8
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-07 59.3 96 42.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-07 59.3 96 42.7
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 2.4e-07 58.9 95 40.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 2.4e-07 58.9 95 40.0
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 2.4e-07 58.9 94 40.4
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 2.4e-07 58.9 94 40.4
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 103 45.6
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 96 39.6
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.4e-07 58.9 102 41.2
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.4e-07 58.9 102 41.2
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.2e-07 58.5 98 38.8
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 3.2e-07 58.5 90 43.3
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 3.2e-07 58.5 94 41.5
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.2e-07 58.5 90 43.3
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 3.2e-07 58.5 90 44.4
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 3.2e-07 58.5 92 43.5
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.2e-07 58.5 62 53.2
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 4.2e-07 58.2 90 40.0
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 5.4e-07 57.8 46 63.0
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 5.4e-07 57.8 47 59.6
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 5.4e-07 57.8 94 40.4
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.1e-07 57.4 101 43.6
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.1e-07 57.4 103 44.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.1e-07 57.4 90 43.3
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 9.3e-07 57.0 90 45.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.2e-06 56.6 94 42.6
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.2e-06 56.6 92 43.5
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-06 56.6 98 39.8
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.2e-06 56.6 98 39.8
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 103 41.7
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.2e-06 56.6 98 43.9
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 1.2e-06 56.6 88 40.9
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.2e-06 56.6 65 50.8
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 1.6e-06 56.2 98 42.9
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.6e-06 56.2 94 40.4
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.6e-06 56.2 93 40.9
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.6e-06 56.2 90 42.2
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.6e-06 56.2 96 37.5
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.6e-06 56.2 104 45.2
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.1e-06 55.8 43 55.8
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 2.1e-06 55.8 94 39.4
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.1e-06 55.8 88 46.6
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.7e-06 55.5 86 38.4
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.7e-06 55.5 39 69.2
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.7e-06 55.5 90 45.6
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.7e-06 55.5 90 43.3
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.7e-06 55.5 106 44.3
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.7e-06 55.5 46 60.9
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.7e-06 55.5 92 44.6
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.5e-06 55.1 86 39.5
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 4.6e-06 54.7 94 40.4
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.6e-06 54.7 79 41.8
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 4.6e-06 54.7 44 50.0
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 6.0e-06 54.3 96 41.7
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 6.0e-06 54.3 90 43.3
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 6.0e-06 54.3 94 38.3
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.8e-06 53.9 94 42.6


User provided reference genes

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