Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 1.3e-51 206.1 104 100.0
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 1.8e-35 152.5 102 75.5
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 5.1e-35 151.0 102 74.5
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 4.3e-34 147.9 104 76.9
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 4.8e-33 144.4 101 76.2
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 2.6e-31 138.7 102 75.5
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 4.5e-31 137.9 103 70.9
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 7.6e-31 137.1 102 70.6
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 1.4e-29 132.9 101 68.3
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 1.9e-29 132.5 100 69.0
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 1.9e-29 132.5 100 73.0
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 5.5e-29 131.0 99 67.7
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 2.1e-28 129.0 94 72.3
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 2.7e-28 128.6 97 69.1
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 6.0e-28 127.5 101 65.3
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 2.3e-27 125.6 100 65.0
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 1.3e-25 119.8 111 62.2
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 2.9e-22 108.6 78 70.5
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 6.7e-19 97.4 95 56.8
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.5e-18 96.3 97 51.5
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 2.5e-18 95.5 78 61.5
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 5.7e-18 94.4 73 63.0
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.3e-17 93.2 96 54.2
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 2.2e-17 92.4 106 53.8
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.2e-17 92.4 106 53.8
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.2e-17 92.4 106 53.8
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.7e-17 91.7 106 52.8
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 3.7e-17 91.7 100 53.0
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 2.4e-16 89.0 99 56.6
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.1e-16 88.6 106 51.9
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 6.9e-16 87.4 74 60.8
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 2.2e-14 82.4 93 49.5
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 6.5e-14 80.9 96 51.0
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 4.2e-13 78.2 93 49.5
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 5.5e-13 77.8 91 53.8
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 1.6e-12 76.3 92 52.2
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 3.6e-12 75.1 93 48.4
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 3.6e-12 75.1 93 48.4
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 6.1e-12 74.3 90 48.9
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 1.0e-11 73.6 98 49.0
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.0e-11 73.6 91 52.7
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 1.8e-11 72.8 91 49.5
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 3.9e-11 71.6 97 47.4
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.9e-11 71.6 93 47.3
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 3.9e-11 71.6 86 50.0
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 5.1e-11 71.2 87 50.6
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 1.1e-10 70.1 86 44.2
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.5e-10 68.9 100 44.0
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 3.3e-10 68.6 100 44.0
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 3.3e-10 68.6 103 41.7
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 5.7e-10 67.8 100 47.0
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 5.7e-10 67.8 94 45.7
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 7.4e-10 67.4 91 46.2
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 7.4e-10 67.4 66 48.5
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 7.4e-10 67.4 71 56.3
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.3e-09 66.6 100 43.0
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.7e-09 66.2 83 47.0
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 1.7e-09 66.2 66 51.5
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 2.2e-09 65.9 98 43.9
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 2.2e-09 65.9 91 46.2
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 2.2e-09 65.9 93 46.2
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.2e-09 65.9 69 52.2
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.2e-09 65.9 109 41.3
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 2.8e-09 65.5 91 46.2
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 2.8e-09 65.5 91 46.2
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 2.8e-09 65.5 91 46.2
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 3.7e-09 65.1 69 55.1
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 4.8e-09 64.7 90 46.7
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 1.4e-08 63.2 91 40.7
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.4e-08 63.2 63 52.4
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 3.1e-08 62.0 90 46.7
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 4.1e-08 61.6 102 44.1
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 4.1e-08 61.6 50 58.0
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.5e-07 59.7 58 56.9
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 2.0e-07 59.3 105 41.0
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.0e-07 59.3 54 51.9
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 3.4e-07 58.5 74 45.9
CARHR120770 Cardamine hirsuta HOM05D014739 ORTHO05D007271 7.7e-07 57.4 87 41.4
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 7.7e-07 57.4 97 39.2
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 1.3e-06 56.6 46 58.7
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 2.2e-06 55.8 73 45.2
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.8e-06 55.1 80 38.8
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 5.0e-06 54.7 96 39.6
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 6.5e-06 54.3 108 38.9
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 6.5e-06 54.3 108 38.9
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 8.5e-06 53.9 97 35.1
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 8.5e-06 53.9 87 42.5


User provided reference genes

Program Settings