Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 6.3e-166 587.8 401 100.0
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 4.1e-157 558.5 395 95.7
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 3.3e-58 229.9 408 47.5
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 3.6e-52 209.9 393 47.8
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 2.3e-51 207.2 405 56.0
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 4.4e-50 203.0 401 44.1
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 5.3e-48 196.1 374 40.4
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.6e-47 193.7 422 47.4
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 7.7e-47 192.2 404 46.0
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 5.0e-46 189.5 404 47.0
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 5.5e-45 186.0 407 40.0
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.3e-43 180.6 406 42.1
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 5.7e-42 176.0 398 50.3
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.3e-41 172.6 412 38.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.1e-40 171.8 394 37.1
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.4e-40 171.4 408 39.7
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 5.3e-40 169.5 408 37.0
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 2.0e-39 167.5 412 37.4
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 2.7e-39 167.2 397 38.0
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.7e-39 167.2 408 36.8
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.7e-39 167.2 410 35.9
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.5e-39 166.8 408 36.8
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 3.5e-39 166.8 412 42.5
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 5.9e-39 166.0 411 39.7
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 7.7e-39 165.6 402 47.8
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 1.3e-38 164.9 408 45.3
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 5.0e-38 162.9 415 36.9
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.5e-37 161.4 301 38.9
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.2e-37 159.8 399 42.6
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.1e-36 157.5 399 43.9
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 2.1e-36 157.5 428 35.5
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 4.7e-36 156.4 398 40.2
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.0e-35 155.2 404 45.0
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 5.2e-35 152.9 407 46.2
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.2e-35 152.9 397 41.6
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 6.8e-35 152.5 415 38.6
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.2e-34 151.8 410 36.3
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 1.5e-34 151.4 409 34.5
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.5e-34 151.4 400 35.8
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 3.4e-34 150.2 403 43.4
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 4.4e-34 149.8 389 44.0
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 5.7e-34 149.4 409 45.7
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 7.5e-34 149.1 408 35.0
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 7.5e-34 149.1 302 42.4
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.3e-33 148.3 397 38.8
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 2.2e-33 147.5 395 36.5
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 3.7e-33 146.7 400 35.0
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 6.3e-33 146.0 430 42.3
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.1e-32 145.2 401 34.4
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 3.1e-32 143.7 403 37.0
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 9.1e-32 142.1 400 32.8
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.7e-31 140.6 402 41.5
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 3.5e-31 140.2 89 87.6
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 4.5e-31 139.8 398 40.5
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.9e-31 139.4 397 35.5
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.9e-31 139.4 405 41.0
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.0e-30 138.7 398 51.0
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-30 138.3 398 40.2
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 3.8e-30 136.7 279 43.0
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 6.5e-30 136.0 414 34.3
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 1.5e-29 134.8 295 36.6
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 3.2e-29 133.7 290 41.4
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 9.5e-29 132.1 356 41.6
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.4e-27 128.3 295 39.3
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 3.0e-27 127.1 160 49.4
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 8.8e-27 125.6 387 38.2
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 3.4e-26 123.6 271 36.9
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 7.5e-26 122.5 295 38.6
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.5e-26 122.5 441 34.9
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 3.7e-25 120.2 345 31.9
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.7e-25 120.2 403 33.5
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.9e-25 119.8 391 35.5
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.4e-24 118.2 163 46.0
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.4e-24 118.2 437 45.1
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.4e-24 118.2 300 39.0
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.4e-24 118.2 192 42.7
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-24 118.2 356 49.7
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 2.4e-24 117.5 159 61.6
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 3.1e-24 117.1 392 39.3
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.1e-24 117.1 392 32.4
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.1e-24 116.7 344 36.6
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.6e-23 114.8 395 31.1
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 2.0e-23 114.4 409 35.2
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 2.7e-23 114.0 161 42.9
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.9e-23 112.8 213 43.2
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.3e-22 110.9 232 36.6
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.0e-22 109.8 412 41.0
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.1e-21 108.6 166 45.2
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.1e-21 108.6 384 30.5
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 4.3e-21 106.7 293 36.2
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 7.3e-21 105.9 154 48.7
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 9.5e-21 105.5 336 33.9
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.2e-20 105.1 61 82.0
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 2.1e-20 104.4 349 42.7
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.8e-20 104.0 286 37.4
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 2.8e-20 104.0 300 32.3
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 3.6e-20 103.6 53 86.8
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 6.1e-20 102.8 51 90.2
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 8.0e-20 102.4 285 33.7
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.8e-19 101.3 311 45.3
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 3.0e-19 100.5 164 42.7
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 4.0e-19 100.1 157 42.7
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 8.9e-19 99.0 350 30.6
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 8.9e-19 99.0 157 42.0
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 8.9e-19 99.0 157 42.0
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.2e-18 98.6 156 40.4
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.2e-18 98.6 210 37.6
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.5e-18 98.2 159 40.3
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 2.0e-18 97.8 221 35.3
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 2.6e-18 97.4 157 41.4
arahy.Tifrunner.gnm1.ann1.EBVM73 Arachis hypogaea HOM05D005997 ORTHO05D004267 3.4e-18 97.1 62 83.9
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 3.4e-18 97.1 157 41.4
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 5.7e-18 96.3 157 41.4
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.7e-18 96.3 64 67.2
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 5.7e-18 96.3 293 34.5
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.3e-17 95.1 157 41.4
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 1.3e-17 95.1 201 37.8
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.7e-17 94.7 152 40.1
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 2.2e-17 94.4 149 42.3
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 2.2e-17 94.4 66 68.2
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 2.9e-17 94.0 155 41.3
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.7e-17 93.6 73 60.3
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 3.7e-17 93.6 151 39.1
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.1e-16 92.0 293 38.6
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.1e-16 92.0 149 41.6
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 2.4e-16 90.9 68 66.2
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 3.2e-16 90.5 156 41.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 3.2e-16 90.5 156 41.0
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 3.2e-16 90.5 293 32.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.1e-16 90.1 71 64.8
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 5.4e-16 89.7 161 38.5
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.4e-16 89.7 59 67.8
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.0e-16 89.4 437 45.1
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 7.0e-16 89.4 49 85.7
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 9.2e-16 89.0 66 62.1
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 9.2e-16 89.0 71 63.4
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 1.2e-15 88.6 147 41.5
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.2e-15 88.6 213 33.8
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.0e-15 87.8 160 36.2
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 2.7e-15 87.4 229 32.8
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.7e-15 87.4 41 90.2
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.7e-15 87.4 286 33.2
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.6e-15 86.7 46 82.6
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.6e-15 86.7 46 82.6
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 1.3e-14 85.1 149 40.3
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 1.7e-14 84.7 149 39.6
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 2.3e-14 84.3 158 45.6
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 3.9e-14 83.6 154 38.3
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 3.9e-14 83.6 88 53.4
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 6.6e-14 82.8 149 38.9
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 6.6e-14 82.8 149 38.9
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 6.6e-14 82.8 149 38.9
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 1.1e-13 82.0 39 89.7
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.1e-13 82.0 39 89.7
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.1e-13 82.0 39 89.7
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.3e-13 80.5 288 30.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 5.6e-13 79.7 297 32.0
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 5.6e-13 79.7 215 34.0
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 3.1e-11 73.9 46 71.7
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 4.0e-11 73.6 42 71.4
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-10 72.0 66 54.5
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.5e-10 71.6 61 55.7
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.8e-10 68.9 42 69.0
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.9e-09 66.6 39 71.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.1e-08 63.5 37 70.3
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 6.0e-07 59.7 62 45.2
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 7.8e-07 59.3 48 50.0
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.3e-06 58.5 52 51.9
TPR.G16984 Trifolium pratense HOM05D003648 ORTHO05D004267 8.6e-06 55.8 97 45.4


User provided reference genes

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