Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AIXL5Y Arachis hypogaea HOM05D003010 ORTHO05D003623 1.2e-35 152.5 74 100.0
arahy.Tifrunner.gnm1.ann1.YNCC4F Arachis hypogaea HOM05D003010 ORTHO05D003623 1.2e-35 152.5 74 100.0
Glyma.01G205800 Glycine max HOM05D003010 ORTHO05D003623 9.9e-17 89.7 59 72.9
Phvul.002G000700 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 8.4e-16 86.7 55 74.5
TPR.G31425 Trifolium pratense HOM05D003010 ORTHO05D003623 5.4e-15 84.0 63 68.3
Medtr5g013240 Medicago truncatula HOM05D003010 ORTHO05D003623 3.5e-14 81.3 54 75.9
Lalb_Chr09g0324231 Lupinus albus HOM05D003010 ORTHO05D003623 2.3e-13 78.6 47 76.6
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 8.7e-13 76.6 48 70.8
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 2.5e-12 75.1 48 72.9
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 3.3e-12 74.7 56 58.9
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 4.3e-12 74.3 48 68.8
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.3e-12 74.3 48 68.8
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.3e-12 74.3 48 68.8
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.3e-12 74.3 48 68.8
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.3e-12 74.3 48 68.8
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 4.3e-12 74.3 51 62.7
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 7.4e-12 73.6 50 70.0
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 7.4e-12 73.6 52 67.3
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 7.4e-12 73.6 50 64.0
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 7.4e-12 73.6 54 64.8
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 9.6e-12 73.2 52 67.3
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 1.6e-11 72.4 47 66.0
Potri.001G152700 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.6e-11 72.4 54 64.8
Atru.chr9.1234 Acer truncatum HOM05D003010 ORTHO05D003623 2.1e-11 72.0 49 63.3
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 2.1e-11 72.0 50 60.0
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 2.1e-11 72.0 47 66.0
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.1e-11 72.0 47 63.8
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 2.1e-11 72.0 47 63.8
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 2.1e-11 72.0 47 70.2
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 2.8e-11 71.6 45 71.1
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.7e-11 71.2 47 63.8
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 3.7e-11 71.2 45 71.1
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 3.7e-11 71.2 47 66.0
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 8.1e-11 70.1 47 70.2
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 8.1e-11 70.1 47 63.8
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 8.1e-11 70.1 47 61.7
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 8.1e-11 70.1 50 64.0
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.1e-10 69.7 57 57.9
MD04G1050500 Malus domestica HOM05D003010 ORTHO05D003623 1.1e-10 69.7 43 69.8
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.1e-10 69.7 55 54.5
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 1.8e-10 68.9 45 71.1
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 2.4e-10 68.6 47 63.8
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 2.4e-10 68.6 51 60.8
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 3.1e-10 68.2 47 57.4
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 9.0e-10 66.6 53 56.6
Eucgr.E00369 Eucalyptus grandis HOM05D003010 ORTHO05D003623 1.2e-09 66.2 48 60.4
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.2e-09 66.2 47 61.7
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 1.2e-09 66.2 47 61.7
Lsat_1_v5_gn_4_126000 Lactuca sativa HOM05D003010 ORTHO05D003623 1.5e-09 65.9 61 52.5
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 1.5e-09 65.9 47 63.8
PGR042G0596 Punica granatum HOM05D003010 ORTHO05D003623 2.0e-09 65.5 52 59.6
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 2.6e-09 65.1 48 62.5
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 2.6e-09 65.1 49 57.1
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 3.4e-09 64.7 49 59.2
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 4.5e-09 64.3 47 57.4
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 5.8e-09 63.9 47 63.8
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 5.8e-09 63.9 45 62.2
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 5.8e-09 63.9 49 59.2
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 7.6e-09 63.5 51 60.8
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 7.6e-09 63.5 46 56.5
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 7.6e-09 63.5 59 50.8
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 7.6e-09 63.5 47 59.6
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 1.0e-08 63.2 51 60.8
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 1.0e-08 63.2 50 50.0
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 1.0e-08 63.2 46 56.5
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 1.0e-08 63.2 59 47.5
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 1.0e-08 63.2 47 53.2
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 1.3e-08 62.8 51 51.0
HanXRQChr17g0550011 Helianthus annuus HOM05D003010 ORTHO05D003623 1.3e-08 62.8 52 53.8
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.3e-08 62.8 47 59.6
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.7e-08 62.4 46 54.3
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 1.7e-08 62.4 50 56.0
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 2.2e-08 62.0 48 54.2
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 2.2e-08 62.0 46 54.3
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.2e-08 62.0 51 52.9
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 3.8e-08 61.2 45 62.2
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 3.8e-08 61.2 62 51.6
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 3.8e-08 61.2 47 51.1
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 3.8e-08 61.2 45 57.8
BcaC09g50429 Brassica carinata HOM05D003010 ORTHO05D003623 4.9e-08 60.8 51 58.8
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 4.9e-08 60.8 51 58.8
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 4.9e-08 60.8 49 51.0
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 6.5e-08 60.5 43 62.8
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 6.5e-08 60.5 46 54.3
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 6.5e-08 60.5 49 51.0
BcaB01g03891 Brassica carinata HOM05D003010 ORTHO05D003623 8.4e-08 60.1 45 57.8
CARHR129910 Cardamine hirsuta HOM05D003010 ORTHO05D003623 8.4e-08 60.1 45 55.6
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 8.4e-08 60.1 52 53.8
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 8.4e-08 60.1 45 53.3
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 8.4e-08 60.1 45 53.3
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 1.1e-07 59.7 48 54.2
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 1.1e-07 59.7 48 50.0
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 1.1e-07 59.7 48 52.1
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 1.1e-07 59.7 51 51.0
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 1.1e-07 59.7 51 51.0
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 1.1e-07 59.7 50 52.0
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 1.1e-07 59.7 50 52.0
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.1e-07 59.7 41 63.4
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 1.1e-07 59.7 55 47.3
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.1e-07 59.7 51 51.0
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 1.1e-07 59.7 46 54.3
BcaNung00140 Brassica carinata HOM05D003010 ORTHO05D003623 1.4e-07 59.3 43 60.5
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.4e-07 59.3 52 50.0
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 1.4e-07 59.3 52 50.0
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.9e-07 58.9 46 52.2
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 1.9e-07 58.9 45 55.6
BcaC01g05717 Brassica carinata HOM05D003010 ORTHO05D003623 2.5e-07 58.5 45 55.6
C03p22900 Brassica napus HOM05D003010 ORTHO05D003623 2.5e-07 58.5 45 55.6
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 2.5e-07 58.5 46 54.3
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 2.5e-07 58.5 46 54.3
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 3.2e-07 58.2 46 50.0
BcaB01g05695 Brassica carinata HOM05D003010 ORTHO05D003623 3.2e-07 58.2 50 58.0
BcaB01g06045 Brassica carinata HOM05D003010 ORTHO05D003623 3.2e-07 58.2 50 58.0
BolC3t12913H Brassica oleracea HOM05D003010 ORTHO05D003623 3.2e-07 58.2 50 58.0
CDE04G1477 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 3.2e-07 58.2 54 44.4
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 3.2e-07 58.2 46 52.2
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 3.2e-07 58.2 46 54.3
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 3.2e-07 58.2 51 54.9
QL12p009508 Quercus lobata HOM05D003010 ORTHO05D003623 3.2e-07 58.2 37 75.7
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 3.2e-07 58.2 45 53.3
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 3.2e-07 58.2 45 55.6
AL4G31750 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 4.2e-07 57.8 45 53.3
AT2G35658 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 4.2e-07 57.8 45 53.3
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 4.2e-07 57.8 50 58.0
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 4.2e-07 57.8 50 58.0
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.2e-07 57.8 50 50.0
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 4.2e-07 57.8 50 50.0
Ah.07g199010 Amaranthus hybridus HOM05D003010 ORTHO05D003623 5.5e-07 57.4 48 56.2
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 5.5e-07 57.4 58 51.7
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 5.5e-07 57.4 49 55.1
Aa31LG9G15070 Aethionema arabicum HOM05D003010 ORTHO05D003623 7.1e-07 57.0 45 53.3
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 7.1e-07 57.0 45 48.9
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 7.1e-07 57.0 45 48.9
C03p03770 Brassica napus HOM05D003010 ORTHO05D003623 7.1e-07 57.0 50 58.0
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 7.1e-07 57.0 44 54.5
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 7.1e-07 57.0 44 54.5
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 7.1e-07 57.0 44 54.5
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 7.1e-07 57.0 43 53.5
BcaB01g05694 Brassica carinata HOM05D003010 ORTHO05D003623 9.3e-07 56.6 50 56.0
FAN06G5032 Fragaria x ananassa HOM05D000255 ORTHO05D000935 9.3e-07 56.6 51 49.0
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 1.2e-06 56.2 45 51.1
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 1.2e-06 56.2 45 51.1
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 1.2e-06 56.2 51 49.0
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 1.2e-06 56.2 50 50.0
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 1.6e-06 55.8 46 50.0
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.6e-06 55.8 45 48.9
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 1.6e-06 55.8 50 48.0
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 1.6e-06 55.8 45 48.9
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.1e-06 55.5 52 46.2
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 2.1e-06 55.5 49 49.0
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 2.1e-06 55.5 51 47.1
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 2.7e-06 55.1 48 45.8
MBI01_g37950_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 2.7e-06 55.1 39 59.0
BcaB04g18394 Brassica carinata HOM05D001429 ORTHO05D001420 3.5e-06 54.7 43 60.5
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 3.5e-06 54.7 49 51.0
AL6G17794 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 4.6e-06 54.3 50 52.0
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 4.6e-06 54.3 44 63.6
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 4.6e-06 54.3 54 44.4
MBI01_g07127_MAGBIO Magnolia biondii HOM05D001436 ORTHO05D000880 4.6e-06 54.3 39 59.0
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 4.6e-06 54.3 44 47.7
Lalb_Chr06g0169801 Lupinus albus HOM05D003010 ORTHO05D003623 6.0e-06 53.9 47 48.9
Manes.14G039600 Manihot esculenta HOM05D003010 ORTHO05D003623 6.0e-06 53.9 48 47.9
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 7.9e-06 53.5 46 50.0
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 7.9e-06 53.5 46 47.8


User provided reference genes

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